Evidence map›Paper›PMID 18425141›Full record

ArticleNature structural & molecular biology2008

Aminoacylation of tRNA with phosphoserine for synthesis of cysteinyl-tRNA(Cys).

Chun-Mei Zhang, Cuiping Liu, Simon Slater, Ya-Ming Hou

Open access · greenAbstract read
In one paragraph

Article in Nature structural & molecular biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 65 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. The mammalian mitochondrial epitranscriptome.Biochimica et biophysica acta. Gene regulatory mechanisms · 2019
    Review
  7. Article
  8. Article
  9. The central role of tRNA in genetic code expansion.Biochimica et biophysica acta. General subjects · 2017
    Review
  10. Article
  11. Article
  12. Review
  13. Methyl transfer by substrate signaling from a knotted protein fold.Nature structural & molecular biology · 2016
    Article
  14. Review
  15. Crystallographic analysis of a subcomplex of the transsulfursome with tRNA for Cys-tRNA(Cys) synthesis.Acta crystallographica. Section F, Structural biology communications · 2016
    Article
  16. From Chemical Mutagenesis to Post-Expression Mutagenesis: A 50 Year Odyssey.Angewandte Chemie (International ed. in English) · 2016
    Review
  17. Article
  18. Article
  19. Article
  20. Ancient translation factor is essential for tRNA-dependent cysteine biosynthesis in methanogenic archaea.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Chun-Mei ZhangDepartment of Biochemistry and Molecular Biology, 233 South 10th Street, Philadelphia, Pennsylvania 19107, USA.
Cuiping Liu
Simon Slater
Ya-Ming Hou
Philadelphia University · USThomas Jefferson University · US

Funding

FUNCTIONAL ANALYSIS OF AN RNA STRUCTURAL MOTIFR01GM056662 · NIGMS · THOMAS JEFFERSON UNIVERSITY · PI HOU, YA-MING · 1998 to 2005
$1.7M
Aminoacyl-tRNA synthetases in ArchaeaR01GM066267 · NIGMS · THOMAS JEFFERSON UNIVERSITY · PI HOU, YA-MING · 2003 to 2006
$1.1M
NIGMS NIH HHS GM066267NIGMS NIH HHS R01 GM056662NIGMS NIH HHS R01 GM066267
6 · The paper itself

Abstract

Cysteinyl-tRNA(Cys) (Cys-tRNA(Cys)) is required for translation and is typically synthesized by cysteinyl-tRNA synthetase (CysRS). However, Methanocaldococcus jannaschii synthesizes Cys-tRNA(Cys) by an indirect pathway, whereby O-phosphoseryl-tRNA synthetase (SepRS) acylates tRNA(Cys) with phosphoserine (Sep), and Sep-tRNA-Cys-tRNA synthase (SepCysS) converts the tRNA-bound phosphoserine to cysteine. We show here that M. jannaschii SepRS differs from CysRS by recruiting the m1G37 modification as a determinant for aminoacylation, and in showing limited discrimination against mutations of conserved nucleotides. Kinetic and binding measurements show that both SepRS and SepCysS bind the reaction intermediate Sep-tRNA(Cys) tightly, and these two enzymes form a stable binary complex that promotes conversion of the intermediate to the product and sequesters the intermediate from binding to elongation factor EF-1alpha or infiltrating into the ribosome. These results highlight the importance of the protein binary complex for efficient synthesis of Cys-tRNA(Cys).

Indexed as

AminoacylationBase SequenceDNA Mutational AnalysisKineticsMethanococcaceaeMolecular Sequence DataMultiprotein ComplexesNucleic Acid ConformationPhosphoserineRNA, Transfer, Amino AcylMultiprotein ComplexesPhosphoserineRNA, Transfer, Amino Acyl

Identifiers

PMID18425141
PMCPMC9655882
OpenAlexW2037825700

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.