Evidence map›Paper›PMID 18424522›Full record

ArticleJournal of bacteriology2008

Transcriptional interference and repression modulate the conjugative ability of the symbiotic plasmid of Rhizobium etli.

Edgardo Sepúlveda, Daniel Pérez-Mendoza, Miguel A Ramírez-Romero, María J Soto, Isabel M López-Lara, Otto Geiger, Juan Sanjuán, Susana Brom, David Romero

Abstract read
In one paragraph

Article in Journal of bacteriology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Comparative genomic analysis ofApplied and environmental microbiology · 2026
    Article
  2. Article
  3. Article
  4. Why are rhizobial symbiosis genes mobile?Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2022
    Article
  5. Transfer of the Symbiotic Plasmid ofFrontiers in microbiology · 2020
    Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Edgardo SepúlvedaCentro de Ciencias Genómicas, Universidad Nacional Autónoma de México, Apartado Postal 565-A, Cuernavaca, Morelos, México.
Daniel Pérez-Mendoza
Miguel A Ramírez-Romero
María J Soto
Isabel M López-Lara
Otto Geiger
Juan Sanjuán
Susana Brom
David Romero

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacteria of the order Rhizobiales are able to establish nitrogen-fixing symbioses with legumes. Commonly, genes for symbiosis are harbored on large symbiotic plasmids. Although the transfer of symbiotic plasmids is commonly detected in nature, there are few experimentally characterized examples. In Rhizobium etli, the product of rctA inhibits the conjugation of the symbiotic plasmid by reducing the transcription of the virB operon. rctA is transcribed divergently from this operon, and its product is predicted to have a DNA binding domain. In the present study, using DNase I footprinting and binding assays, we demonstrated the specific binding of RctA to the virB operon promoter. A 9-bp motif in the spacer region of this promoter (the rctA binding motif box) and the presence of a functional -10 region were critical elements for RctA binding. Transcriptional fusion analyses revealed that the elimination of either element provoked a relief of RctA-mediated repression. These data support a model in which RctA inhibits the access of the RNA polymerase to the virB promoter. Interestingly, rctA expression levels were modulated by transcriptional interference from transcripts emanating from the virB promoter. This phenomenon adds another level of regulation for this system, thus revealing a novel mechanism of plasmid transfer regulation in the Rhizobiales.

Indexed as

Transcription, GeneticBacterial ProteinsBase SequenceConjugation, GeneticDNA FootprintingElectrophoretic Mobility Shift AssayModels, BiologicalOperonPlasmidsPromoter Regions, GeneticProtein BindingRhizobium etliBacterial Proteins

Identifiers

PMID18424522
PMCPMC2446766

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.