Evidence map›Paper›PMID 18421567›Full record

ArticleAntonie van Leeuwenhoek2008

Structural characterization and functional properties of a novel lipomannan variant isolated from a Corynebacterium glutamicum pimB' mutant.

Arun K Mishra, Christina Klein, Sudagar S Gurcha, Luke J Alderwick, Ponnusamy Babu, Paul G Hitchen, Howard R Morris, Anne Dell, Gurdyal S Besra, Lothar Eggeling

Open access · hybridAbstract read
In one paragraph

Article in Antonie van Leeuwenhoek, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 30 citations in OpenAlex.

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  15. The cell envelope glycoconjugates of Mycobacterium tuberculosis.Critical reviews in biochemistry and molecular biology
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Arun K MishraSchool of Biosciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, UK.
Christina Klein
Sudagar S Gurcha
Luke J Alderwick
Ponnusamy Babu
Paul G Hitchen
Howard R Morris
Anne Dell
Gurdyal S Besra
Lothar Eggeling
University of Birmingham · GBImperial College London · GBForschungszentrum Jülich · DEWokingham Hospital · GB

Funding

Biotechnology and Biological Sciences Research CouncilMedical Research Council G9901077Wellcome TrustWellcome Trust 081569/Z/06/Z
6 · The paper itself

Abstract

The genus Corynebacterium is part of the phylogenetic group nocardioform actinomycetes, which also includes the genus Mycobacterium. Members of this phylogenetic group have a characteristic cell envelope structure, which is dominated by complex lipids and amongst these, lipoglycans are of particular interest. The disruption of NCgl2106 in C. glutamicum resulted in a mutant devoid of monoacylated phosphatidyl-myo-inositol dimannoside (Ac(1)PIM(2)) resulting in the accumulation of Ac(1)PIM(1) and cessation of phosphatidyl-myo-inositol (PI) based lipomannan (Cg-LM, now also termed 'Cg-LM-A') and lipoarabinomannan (Cg-LAM) biosynthesis. Interestingly, SDS-analysis of the lipoglycan fraction from the mutant revealed the synthesis of a single novel lipoglycan, now termed 'Cg-LM-B'. Further chemical analyses established the lipoglycan possessed an alpha-D: -glucopyranosyluronic acid-(1 --> 3)-glycerol (GlcAGroAc(2)) based anchor which was then further glycosylated by 8-22 mannose residues, with Man(12-20)GlcAGroAC(2) molecular species being the most abundant, to form a novel lipomannan structure (Cg-LM-B). The deletion of NCgl2106 in C. glutamicum has now provided a useful strain, in addition with a deletion mutant of NCgl0452 in C. glutamicum for the purification of Cg-LM-A and Cg-LM-B. Interestingly, both Cg-LM species induced a similar production of TNF-alpha by a human macrophage cell line suggesting that the phospho-myo-inositol residue of the PI-anchor does not play a key role in lipoglycan pro-inflammatory activity.

Indexed as

MutationBiosynthetic PathwaysCell LineCorynebacterium glutamicumHumansLipidsLipopolysaccharidesMacrophagesMass SpectrometryPhosphatidylinositolsTumor Necrosis Factor-alphaLipidslipomannanLipopolysaccharidesphosphatidylinositol dimannosidePhosphatidylinositolsTumor Necrosis Factor-alpha

Identifiers

PMID18421567
PMCPMC2480597
OpenAlexW2057947732

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.