Evidence map›Paper›PMID 18420963›Full record

ArticleAmerican journal of respiratory and critical care medicine2008

Mapping of a novel susceptibility locus suggests a role for MC3R and CTSZ in human tuberculosis.

Graham S Cooke, Sarah J Campbell, Steve Bennett, Christian Lienhardt, Keith P W J McAdam, Giorgio Sirugo, Oumou Sow, Per Gustafson, Frank Mwangulu, Paul van Helden and 3 more

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in American journal of respiratory and critical care medicine, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 44 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed, 1 pooled it
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 1 synthesis or guideline pooled it, 86 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Genetics and evolution of tuberculosis pathogenesis: New perspectives and approaches.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2020
    Review
  12. Article
  13. Article
  14. The Interplay of Human andFrontiers in genetics · 2019
    Review
  15. Human genetics of mycobacterial disease.Mammalian genome : official journal of the International Mammalian Genome Society · 2018
    Review
  16. Article
  17. Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

13 authors at 7 institutions in 6 countries.

Graham S CookeWellcome Trust Centre for Human Genetics, University of Oxford, Churchill Hospital, Headington, Oxford, United Kingdom. gcooke@africacentre.ac.za
Sarah J Campbell
Steve Bennett
Christian Lienhardt
Keith P W J McAdam
Giorgio Sirugo
Oumou Sow
Per Gustafson
Frank Mwangulu
Paul van Helden
Paul Fine
Eileen G Hoal
Adrian V S Hill
Centre for Human Genetics · GBMalawi Epidemiology and Intervention Research Unit · MWMRC Unit the Gambia · GMSouth African Medical Research Council · ZABandim Health Project · GWIgnace Deen Hospital · GNLondon School of Hygiene & Tropical Medicine · GB

Funding

Medical Research Council G0000690Wellcome Trust 079828Wellcome Trust IC18CT980375
6 · The paper itself

Abstract

rationaleTuberculosis remains a major cause of morbidity and mortality in the developing world. A better understanding of the mechanisms of disease protection could allow novel strategies to disease management and control.

objectivesTo identify human genomic loci with evidence of linkage to tuberculosis susceptibility and, within these loci, to identify individual genes influencing tuberculosis susceptibility.

methodsAffected sibling pair analysis in South African and Malawian populations. Independent case-control study in West Africa. MEASUREMENTS AND MAIN

resultsTwo novel putative loci for tuberculosis susceptibility are identified: chromosome 6p21-q23 and chromosome 20q13.31-33--the latter with the strongest evidence for any locus reported to date in human tuberculosis (single point LOD score of 3.1, P = 10(-4), with a maximum likelihood score [MLS] of 2.8). An independent, multistage genetic association study in West African populations mapped this latter region in detail, finding evidence that variation in the melanocortin 3 receptor (MC3R) and cathepsin Z (CTSZ) genes play a role in the pathogenesis of tuberculosis.

conclusionsThese results demonstrate how a genomewide approach to the complex phenotype of human tuberculosis can identify novel targets for further research.

Indexed as

Polymorphism, GeneticAfrica, WesternBlack PeopleCase-Control StudiesCathepsin KCathepsinsCathepsin ZGenetic LinkageGenetic Predisposition to DiseaseHumansLikelihood FunctionsMalawiMicrosatellite RepeatsPedigreeReceptor, Melanocortin, Type 3Regression AnalysisCathepsin KCathepsinsCathepsin ZCTSK protein, humanCTSZ protein, humanMC3R protein, humanReceptor, Melanocortin, Type 3

Identifiers

PMID18420963
PMCPMC2643210
OpenAlexW2131136517

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.