Evidence map›Paper›PMID 18420932›Full record

ArticleScience (New York, N.Y.)2008

The chemical genomic portrait of yeast: uncovering a phenotype for all genes.

Maureen E Hillenmeyer, Eula Fung, Jan Wildenhain, Sarah E Pierce, Shawn Hoon, William Lee, Michael Proctor, Robert P St Onge, Mike Tyers, Daphne Koller and 4 more

Abstract read
In one paragraph

Article in Science (New York, N.Y.), 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 569 papers.

0numbers the graph read from it
0cells of the map it votes in
569citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

569 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Review
  6. New hit compounds againstAntimicrobial agents and chemotherapy · 2026
    Article
  7. Article
  8. Sterol divergence across eukaryotic kingdoms determines membrane susceptibility to saponins, a class of plant defense compounds.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  9. The principles of systems biology.Experimental physiology · 2026
    Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Review
  15. Article
  16. The impact of rearing environment onbioRxiv : the preprint server for biology · 2025
    Article
  17. Article
  18. Article
  19. Review
  20. Article

509 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Maureen E HillenmeyerStanford Genome Technology Center, Stanford University, Palo Alto, CA 94304, USA.
Eula Fung
Jan Wildenhain
Sarah E Pierce
Shawn Hoon
William Lee
Michael Proctor
Robert P St Onge
Mike Tyers
Daphne Koller
Russ B Altman
Ronald W Davis
Corey Nislow
Guri Giaever

Funding

THE STANFORD PHARMACOGENETICS KNOWLEDGE BASEU01GM061374 · NIGMS · STANFORD UNIVERSITY · PI ALTMAN, RUSS BIAGIO · 2000 to 2009
$24.0M
NIGMS NIH HHS U01 GM061374
6 · The paper itself

Abstract

Genetics aims to understand the relation between genotype and phenotype. However, because complete deletion of most yeast genes ( approximately 80%) has no obvious phenotypic consequence in rich medium, it is difficult to study their functions. To uncover phenotypes for this nonessential fraction of the genome, we performed 1144 chemical genomic assays on the yeast whole-genome heterozygous and homozygous deletion collections and quantified the growth fitness of each deletion strain in the presence of chemical or environmental stress conditions. We found that 97% of gene deletions exhibited a measurable growth phenotype, suggesting that nearly all genes are essential for optimal growth in at least one condition.

Indexed as

Genes, EssentialGenes, FungalGenome, FungalCulture MediaDrug Resistance, Multiple, FungalGene DeletionGenes, MDRGenomicsHeterozygoteHomozygoteMetabolic Networks and PathwaysMultigene FamilyPhenotypeSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSignal TransductionCulture MediaSaccharomyces cerevisiae ProteinsSmall Molecule Libraries

Identifiers

PMID18420932
PMCPMC2794835

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.