Evidence map›Paper›PMID 18414419›Full record

ArticleInternational journal of obesity (2005)2008

Candidate genes for obesity revealed from a C57BL/6J x 129S1/SvImJ intercross.

Z Su, R Korstanje, S-W Tsaih, B Paigen

Open access · greenAbstract read
In one paragraph

Article in International journal of obesity (2005), 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 32 citations in OpenAlex.

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  12. Linking cellular zinc status to body weight and fat mass: mapping quantitative trait loci in Znt7 knockout mice.Mammalian genome : official journal of the International Mammalian Genome Society · 2014
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  20. The genetics of obesity and the metabolic syndrome.Endocrine, metabolic & immune disorders drug targets · 2010
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Z SuThe Jackson Laboratory, Bar Harbor, ME 04609, USA.
R Korstanje
S-W Tsaih
B Paigen
Jackson Laboratory · US

Funding

Shared Resource ManagementP30CA034196 · NCI · JACKSON LABORATORY · PI William Carl Skarnes · 1985 to 2026
$61.9M
UNC and PERLEGEN, IncP50GM076468 · NIGMS · JACKSON LABORATORY · PI PETKOV, PETKO M · 2006 to 2015
$31.0M
From QTL to Gene for HDL CholesterolR37HL077796 · NHLBI · JACKSON LABORATORY · PI PAIGEN, BEVERLY J · 2009 to 2018
$4.3M
Cloning QTL Genes for Plasma HDL CholesterolR01HL081162 · NHLBI · JACKSON LABORATORY · PI KORSTANJE, RONNY · 2006 to 2013
$3.3M
From QTL to Gene for HDL CholesterolR01HL077796 · NHLBI · JACKSON LABORATORY · PI PAIGEN, BEVERLY J · 2004 to 2008
$2.1M
Identifying Genes Regulating HDL Cholesterol LevelsR01HL074086 · NHLBI · JACKSON LABORATORY · PI PAIGEN, BEVERLY J · 2004 to 2007
$994k
NCI NIH HHS CA034196NCI NIH HHS P30 CA034196NHLBI NIH HHS HL74086NHLBI NIH HHS HL77796NHLBI NIH HHS HL 81162NHLBI NIH HHS R01 HL074086NHLBI NIH HHS R01 HL077796NHLBI NIH HHS R01 HL081162NHLBI NIH HHS R37 HL077796NIGMS NIH HHS GM076468NIGMS NIH HHS P50 GM076468
6 · The paper itself

Abstract

objectiveTo identify the genes controlling body fat, we carried out a quantitative trait locus (QTL) analysis using C57BL/6J (B6) and 129S1/SvImJ (129) mice, which differ in obesity susceptibility after consuming an atherogenic diet.

methodsMice were fed chow until 8 weeks and an atherogenic diet from 8 to 16 weeks; body fatness was measured by X-ray absorptiometry in 528 (B6 x 129) F(2) at 8 and 16 weeks. A high-density genome scan was performed using 508 polymorphic markers. After identifying the genetic loci, we narrowed the QTL using comparative genomics and bioinformatics.

resultsThe percentage of body fat was significantly linked to loci on chromosomes (Chr) 1 (22, 68 and 173 Mb), 4 (74 Mb), 5 (73 Mb), 7 (88 Mb), 8 (43 and 80 Mb), 9 (55 Mb), 11 (115 Mb) and 12 (32 Mb); three suggestive loci on Chrs 6 (76 Mb), 9 (30 Mb) and 16 (26 Mb) and two pairs of interacting loci (Chr 2 at 99.8 Mb with Chr 7; Chr 1 at 68 Mb with Chr 11). Comparative genomics narrowed the QTL intervals by 20-57% depending on the chromosome; in most cases, haplotype analysis further narrowed them by about 90%.

conclusionsOur analysis identified 15 QTL for percentage of body fat. We narrowed the QTL using comparative genomics and haplotype analysis and suggest several candidate genes: Apcs on Chr 1, Ppargc1a on Chr 5, Ucp1 on Chr 8, Angptl6 on Chr 9 and Lpin1 on Chr 12.

Indexed as

Quantitative Trait LociAnimalsChromosome MappingComputational BiologyCrosses, GeneticEpistasis, GeneticFemaleGenetic MarkersGenomicsGenotypeHaplotypesMaleMiceMice, Inbred C57BLMice, Mutant StrainsModels, AnimalGenetic Markers

Identifiers

PMID18414419
PMCPMC2782629
OpenAlexW1977839674

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.