Evidence map›Paper›PMID 18413740›Full record

ArticleCancer research2008

DNA methyltransferase 1 and 3B activate BAG-1 expression via recruitment of CTCFL/BORIS and modulation of promoter histone methylation.

Lunching Sun, Lei Huang, Phuongmai Nguyen, Kheem S Bisht, Gil Bar-Sela, Allen S Ho, C Matthew Bradbury, Wenqiang Yu, Hengmi Cui, Sunmin Lee and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Cancer research, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 46 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Delineation of a KDM2B-related neurodevelopmental disorder and its associated DNA methylation signature.Genetics in medicine : official journal of the American College of Medical Genetics · 2023
    Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. BORIS: a key regulator of cancer stemness.Cancer cell international · 2018
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Epigenetics and autism.Autism research and treatment · 2013
    Review
  16. Article
  17. Article
  18. Review
  19. BORIS binding to the promoters of cancer testis antigens, MAGEA2, MAGEA3, and MAGEA4, is associated with their transcriptional activation in lung cancer.Clinical cancer research : an official journal of the American Association for Cancer Research · 2011
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 1 country.

Lunching SunRadiation Oncology Branch, Center for Cancer Research, National Cancer Institute, NIH, Bethesda, Maryland, USA.
Lei Huang
Phuongmai Nguyen
Kheem S Bisht
Gil Bar-Sela
Allen S Ho
C Matthew Bradbury
Wenqiang Yu
Hengmi Cui
Sunmin Lee
Jane B Trepel
Andrew P Feinberg
David Gius
National Institutes of Health · USJohns Hopkins Medicine · USMolecular Oncology (United States) · USCenter for Cancer Research · USNational Cancer Institute · US

Funding

Signal Transduction Events and the Regulation of Cell GrowthZICSC006743 · NCI · DIVISION OF CLINICAL SCIENCES - NCI · PI TREPEL, JANE B · 2009 to 2023
$13.8M
GENOMIC IMPRINTING IN CANCERR01CA065145 · NCI · JOHNS HOPKINS UNIVERSITY · PI LEVCHENKO, ANDRE · 1994 to 2011
$5.8M
MOLECULAR PATHOLOGY OF WILMS TUMOR RELATED GENES 11PR01CA054358 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ANDREW P. FEINBERG · 1991 to 2026
$5.5M
BWS and Embryonal Tumor Suppressor Genes on 11p15R37CA054358 · NCI · JOHNS HOPKINS UNIVERSITY · PI FEINBERG, ANDREW P. · 2001 to 2009
$4.0M
ROLE OF THE NUCLEAR MATRIX IN DOUBLE STRAND BREAK REPAIRP01CA075556 · NCI · WASHINGTON UNIVERSITY · PI ROTI ROTI, JOSEPH L · 1997 to 2003
$2.2M
Epigenetic regulation of of Gene Expression and multi-modality resistance in tumZ01BC010544 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI GIUS, DAVID · 2003 to 2008
$1.6M
HSP90 as a Molecular Target for Ionizing RadiationZ01BC010543 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI GIUS, DAVID · 2003 to 2008
$1.1M
Epigenetic Regulation of Gene Expression and Resistance in Tumor CellsZIABC010544 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI GIUS, DAVID · 2009 to 2010
$736k
GI RESTRICTION POINT &TCR ACTIVATION INDUCED APOPTOSISK08CA072602 · NCI · WASHINGTON UNIVERSITY · PI GIUS, DAVID · 1997 to 2000
$83k
Intramural NIH HHS Z01 BC010544NCI NIH HHS CA65145NCI NIH HHS CA72602NCI NIH HHS CA75556NCI NIH HHS R01 CA054358NCI NIH HHS R01 CA065145NCI NIH HHS R37 CA054358
6 · The paper itself

Abstract

In a previous genomic analysis, using somatic methyltransferase (DNMT) knockout cells, we showed that hypomethylation decreased the expression of as many genes as were observed to increase, suggesting a previously unknown mechanism for epigenetic regulation. To address this idea, the expression of the BAG family genes was used as a model. These genes were used because their expression was decreased in DNMT1(-/-), DNMT3B(-/-), and double knockout cells and increased in DNMT1-overexpressing and DNMT3B-overexpressing cells. Chromatin immunoprecipitation analysis of the BAG-1 promoter in DNMT1-overexpressing or DNMT3B-overexpressing cells showed a permissive dimethyl-H3-K4/dimethyl-H3-K9 chromatin status associated with DNA-binding of CTCFL/BORIS, as well as increased BAG-1 expression. In contrast, a nonpermissive dimethyl-H3-K4/dimethyl-H3-K9 chromatin status was associated with CTCF DNA-binding and decreased BAG-1 expression in the single and double DNMT knockout cells. BORIS short hairpin RNA knockdown decreased both promoter DNA-binding, as well as BAG-1 expression, and changed the dimethyl-H3-K4/dimethyl-H3-K9 ratio to that characteristic of a nonpermissive chromatin state. These results suggest that DNMT1 and DNMT3B regulate BAG-1 expression via insulator protein DNA-binding and chromatin dynamics by regulating histone dimethylation.

Indexed as

Cell Line, TumorChromatinColonic NeoplasmsDNA-Binding ProteinsDNA (Cytosine-5-)-Methyltransferase 1DNA (Cytosine-5-)-MethyltransferasesDNA Methyltransferase 3BDNA PrimersGenes, ReporterHistone-Lysine N-MethyltransferaseHistone MethyltransferasesHumansImmunoblottingPlasmidsPolymerase Chain ReactionPromoter Regions, GeneticBCL2-associated athanogene 1 proteinChromatinCTCFL protein, humanDNA-Binding ProteinsDNA (Cytosine-5-)-Methyltransferase 1DNA (Cytosine-5-)-MethyltransferasesDNA Methyltransferase 3BDNA PrimersDNMT1 protein, humanHistone-Lysine N-MethyltransferaseHistone MethyltransferasesProtein MethyltransferasesRNA, NeoplasmTranscription Factors

Identifiers

PMID18413740
PMCPMC2733164
OpenAlexW1967282509

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.