Evidence map›Paper›PMID 18411280›Full record

ArticleThe Journal of biological chemistry2008

Control of the timing of promoter escape and RNA catalysis by the transcription factor IIb fingertip.

Khiem Tran, Jay D Gralla

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. The essential and multifunctional TFIIH complex.Protein science : a publication of the Protein Society · 2018
    Review
  3. Article
  4. Review
  5. Promoter clearance by RNA polymerase II.Biochimica et biophysica acta · 2013
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Khiem TranDepartment of Chemistry and Biochemistry and The Molecular Biology Institute, University of California, Los Angeles, California 90095, USA.
Jay D Gralla
University of California, Los Angeles · US

Funding

MECHANISM OF INITIATION BY RNA POLYMERASE IIR01GM049048 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI GRALLA, JAY D · 1994 to 2007
$2.0M
NIGMS NIH HHS GM49048NIGMS NIH HHS R01 GM049048
6 · The paper itself

Abstract

Transcription factor IIB (TFIIB) recruits RNA polymerase II to promoters and inserts a finger domain into its active site, with unknown consequences. Here we show that that the tip of this finger is important for two transcription initiation functions. First, TFIIB acts as a catalytic cofactor for initial RNA bond formation. It does so via a pair of fingertip aspartates that can bind magnesium, placing TFIIB within a family of proteins that insert finger domains to alter the catalytic functions of RNA polymerase. Second, the TFIIB fingertip mediates the timing of the release of TFIIB that is associated with appropriate promoter escape. These initiation requirements may assist in RNA quality control by minimizing functional synthesis when RNA polymerase becomes inappropriately associated with the genome without having been recruited there by TFIIB.

Indexed as

CatalysisGenome, HumanHumansPromoter Regions, GeneticProtein Structure, TertiaryRNA, MessengerRNA Polymerase IITranscription Factor TFIIBRNA, MessengerRNA Polymerase IITranscription Factor TFIIB

Identifiers

PMID18411280
PMCPMC2414274
OpenAlexW2048452372

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.