Evidence map›Paper›PMID 18410126›Full record

ArticleBiochemistry2008

Structure of Ca2+-bound S100A4 and its interaction with peptides derived from nonmuscle myosin-IIA.

Vladimir N Malashkevich, Kristen M Varney, Sarah C Garrett, Paul T Wilder, David Knight, Thomas H Charpentier, Udupi A Ramagopal, Steven C Almo, David J Weber, Anne R Bresnick

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 89 citations in OpenAlex.

  1. Article
  2. A first structural model for covalent dimerization of S100 proteins.Acta crystallographica. Section F, Structural biology communications · 2026
    Article
  3. Article
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  6. Review
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  10. RAGE Inhibitors for Targeted Therapy of Cancer: A Comprehensive Review.International journal of molecular sciences · 2022
    Review
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  12. Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Review
  18. Article
  19. S100 Proteins in Acute Myeloid Leukemia.Neoplasia (New York, N.Y.) · 2018
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Vladimir N MalashkevichDepartment of Biochemistry, Albert Einstein College of Medicine, 1300 Morris Park Avenue, Bronx, New York 10461, USA.
Kristen M Varney
Sarah C Garrett
Paul T Wilder
David Knight
Thomas H Charpentier
Udupi A Ramagopal
Steven C Almo
David J Weber
Anne R Bresnick
University of Maryland, Baltimore · USAlbert Einstein College of Medicine · US

Funding

WORD PROCESSORP30CA013330 · NCI · YESHIVA UNIVERSITY · PI THOMAS E ROHAN · 1985 to 2026
$111.2M
Restoration of Tumor Suppression Activity in Malignant MelanomaR01CA107331 · NCI · UNIVERSITY OF MARYLAND BALTIMORE · PI WEBER, DAVID JOSEPH · 2006 to 2015
$5.4M
The Structure and Function of S100 ProteinsR01GM058888 · NIGMS · UNIVERSITY OF MARYLAND BALTIMORE · PI WEBER, DAVID JOSEPH · 1999 to 2010
$3.4M
Novel Mechanisms of Myosin-II Mediated MotilityR01GM069945 · NIGMS · ALBERT EINSTEIN COL OF MED YESHIVA UNIV · PI BRESNICK, ANNE R · 2004 to 2007
$1.1M
800 MHZ NMR SPECTROMETERS10RR015741 · NCRR · UNIVERSITY OF MARYLAND BALTIMORE · PI WEBER, DAVID JOSEPH · 2001 to 2001
$500k
600 MHz NMR Spectrometer ConsoleS10RR023447 · NCRR · UNIVERSITY OF MARYLAND BALTIMORE · PI WEBER, DAVID JOSEPH · 2007 to 2007
$362k
Cryoprobe for a 600 Mhz NMR spectrometerS10RR016812 · NCRR · UNIVERSITY OF MARYLAND BALTIMORE · PI WEBER, DAVID JOSEPH · 2002 to 2002
$231k
NCI NIH HHS CA107331NCI NIH HHS P30 CA013330NCI NIH HHS P30CA13330NCI NIH HHS R01 CA107331NCRR NIH HHS S10 RR015741NCRR NIH HHS S10 RR016812NCRR NIH HHS S10 RR023447NIGMS NIH HHS GM069945NIGMS NIH HHS GM58888NIGMS NIH HHS R01 GM058888NIGMS NIH HHS R01 GM069945
6 · The paper itself

Abstract

S100A4, also known as mts1, is a member of the S100 family of Ca2+-binding proteins that is directly involved in tumor invasion and metastasis via interactions with specific protein targets, including nonmuscle myosin-IIA (MIIA). Human S100A4 binds two Ca2+ ions with the typical EF-hand exhibiting an affinity that is nearly 1 order of magnitude tighter than that of the pseudo-EF-hand. To examine how Ca2+ modifies the overall organization and structure of the protein, we determined the 1.7 A crystal structure of the human Ca2+-S100A4. Ca2+ binding induces a large reorientation of helix 3 in the typical EF-hand. This reorganization exposes a hydrophobic cleft that is comprised of residues from the hinge region,helix 3, and helix 4, which afford specific target recognition and binding. The Ca2+-dependent conformational change is required for S100A4 to bind peptide sequences derived from the C-terminal portion of the MIIA rod with submicromolar affinity. In addition, the level of binding of Ca2+ to both EF-hands increases by 1 order of magnitude in the presence of MIIA. NMR spectroscopy studies demonstrate that following titration with a MIIA peptide, the largest chemical shift perturbations and exchange broadening effects occur for residues in the hydrophobic pocket of Ca2+-S100A4. Most of these residues are not exposed in apo-S100A4 and explain the Ca2+ dependence of formation of theS100A4-MIIA complex. These studies provide the foundation for understanding S100A4 target recognition and may support the development of reagents that interfere with S100A4 function.

Indexed as

CalciumCrystallography, X-RayDimerizationHumansModels, MolecularMusclesNonmuscle Myosin Type IIANuclear Magnetic Resonance, BiomolecularPeptide FragmentsProtein BindingProtein Structure, QuaternaryS100 Calcium-Binding Protein A4S100 ProteinsThermodynamicsCalciumNonmuscle Myosin Type IIAPeptide FragmentsS100A4 protein, humanS100 Calcium-Binding Protein A4S100 Proteins

Identifiers

PMID18410126
PMCPMC2633413
OpenAlexW1979601391

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.