Evidence map›Paper›PMID 18408155›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2008

The genome of Bacillus coahuilensis reveals adaptations essential for survival in the relic of an ancient marine environment.

Luis David Alcaraz, Gabriela Olmedo, Germán Bonilla, René Cerritos, Gustavo Hernández, Alfredo Cruz, Enrique Ramírez, Catherine Putonti, Beatriz Jiménez, Eva Martínez and 12 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
6.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 110 citations in OpenAlex.

  1. Article
  2. Advances in microbial sulfoquinovose catabolism.Frontiers in microbiology · 2026
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  10. Mechanisms of inward transmembrane proton translocation.Nature structural & molecular biology · 2023
    Article
  11. Article
  12. Review
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  14. Article
  15. A Novel Thermostable and Alkaline Protease Produced fromMolecules (Basel, Switzerland) · 2021
    Article
  16. Review
  17. Transcriptional and Morpho-Physiological Responses ofInternational journal of molecular sciences · 2020
    Article
  18. Evolutionary Rescue of an EnvironmentalFrontiers in microbiology · 2020
    Article
  19. Bacterial Diversity and Interaction Networks ofFrontiers in plant science · 2020
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 6 institutions in 3 countries.

Luis David AlcarazLaboratorio Nacional de Genómica para la Biodiversidad (Langebio), Departamento de Ingeniería Genética and Departamento de Biotecnología, Cinvestav, Campus Guanajuato, AP 629 Irapuato, Guanajuato CP36500, México.
Gabriela Olmedo
Germán Bonilla
René Cerritos
Gustavo Hernández
Alfredo Cruz
Enrique Ramírez
Catherine Putonti
Beatriz Jiménez
Eva Martínez
Varinia López
Jacqueline L Arvizu
Francisco Ayala
Francisco Razo
Juan Caballero
Janet Siefert
Luis Eguiarte
Jean-Philippe Vielle
Octavio Martínez
Valeria Souza
Alfredo Herrera-Estrella
Luis Herrera-Estrella
Centro de Ingeniería Genética y Biotecnología · CUInstituto de Ecología · MXCenter for Research and Advanced Studies of the National Polytechnic Institute · MXRice University · USUniversidad Nacional Autónoma de México · MXUniversity of Houston · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Cuatro Ciénegas Basin (CCB) in the central part of the Chihuahan desert (Coahuila, Mexico) hosts a wide diversity of microorganisms contained within springs thought to be geomorphological relics of an ancient sea. A major question remaining to be answered is whether bacteria from CCB are ancient marine bacteria that adapted to an oligotrophic system poor in NaCl, rich in sulfates, and with extremely low phosphorus levels (<0.3 microM). Here, we report the complete genome sequence of Bacillus coahuilensis, a sporulating bacterium isolated from the water column of a desiccation lagoon in CCB. At 3.35 Megabases this is the smallest genome sequenced to date of a Bacillus species and provides insights into the origin, evolution, and adaptation of B. coahuilensis to the CCB environment. We propose that the size and complexity of the B. coahuilensis genome reflects the adaptation of an ancient marine bacterium to a novel environment, providing support to a "marine isolation origin hypothesis" that is consistent with the geology of CCB. This genomic adaptation includes the acquisition through horizontal gene transfer of genes involved in phosphorous utilization efficiency and adaptation to high-light environments. The B. coahuilensis genome sequence also revealed important ecological features of the bacterial community in CCB and offers opportunities for a unique glimpse of a microbe-dominated world last seen in the Precambrian.

Indexed as

Biological EvolutionGenome, BacterialSeawaterAdaptation, PhysiologicalBacillusBase SequenceEnvironmentGenes, BacterialGene Transfer, HorizontalLightMolecular Sequence DataPhosphorusPhosphorus

Identifiers

PMID18408155
PMCPMC2311347
OpenAlexW2062043949

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.