Evidence map›Paper›PMID 18403374›Full record

ArticleThe Journal of biological chemistry2008

The TpsB translocator HMW1B of haemophilus influenzae forms a large conductance channel.

Guillaume Duret, Michal Szymanski, Kyoung-Jae Choi, Hye-Jeong Yeo, Anne H Delcour

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Guillaume DuretDepartment of Biology & Biochemistry, University of Houston, Houston, Texas 77204-5001, USA.
Michal Szymanski
Kyoung-Jae Choi
Hye-Jeong Yeo
Anne H Delcour
University of Houston · US

Funding

Structural Studies on Bacterial Two-Partner Secretion SystemsR01AI068943 · NIAID · UNIVERSITY OF HOUSTON · PI YEO, HYEJEONG · 2007 to 2011
$1.6M
NIAID NIH HHS AI068943
6 · The paper itself

Abstract

The Haemophilus influenzae HMW1 adhesin is secreted via the two-partner secretion pathway and requires HMW1B for translocation across the outer membrane. HMW1B belongs to the Omp85-TpsB superfamily of transporters and consists of two structural domains, a C-terminal transmembrane beta-barrel and an N-terminal periplasmic domain. We investigated the electrophysiological properties of the purified full-length HMW1B and the C-terminal domain using planar lipid bilayers. Both the full-length and the truncated proteins formed conductive pores with a low open probability, two well defined conductance states, and other substates. The kinetic patterns of the two conductance states were distinct, with rapid and frequent transitions to the small conductance state and occasional and more prolonged openings to the large conductance state. The channel formed by the full-length HMW1B showed selectivity for cations, which decreased when measured at pH 5.2, suggesting the presence of acidic residues in the pore. The C-terminal domain of HMW1B was less stable and required reconstitution into liposomes prior to insertion in the bilayer. It formed a channel of smaller conductance but a similar gating pattern as the full-length protein, demonstrating the ability of the last 312 C-terminal amino acids to form a pore and suggesting that the periplasmic domain is not involved in occluding the pore, nor in controlling the inherent basal kinetics of the channel. The HMW1 pro-piece containing the secretion domain, although binding to the channel with high affinity, did not induce channel opening.

Indexed as

Adhesins, BacterialCell MembraneHaemophilus influenzaeHydrogen-Ion ConcentrationKineticsLipid BilayersMembrane Transport ProteinsProtein BindingProtein Structure, SecondaryProtein Structure, TertiaryProtein TransportAdhesins, BacterialHMW1 protein, bacteriaLipid BilayersMembrane Transport Proteins

Identifiers

PMID18403374
PMCPMC2414297
OpenAlexW2059499977

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.