Evidence map›Paper›PMID 18402432›Full record

ArticleJournal of medicinal chemistry2008

Structural determinants for affinity enhancement of a dual antagonist peptide entry inhibitor of human immunodeficiency virus type-1.

Hosahudya Gopi, M Umashankara, Vanessa Pirrone, Judith LaLonde, Navid Madani, Ferit Tuzer, Sabine Baxter, Isaac Zentner, Simon Cocklin, Navneet Jawanda and 8 more

Abstract read
In one paragraph

Article in Journal of medicinal chemistry, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 46 citations in OpenAlex.

  1. Article
  2. Review
  3. Peptide-Based HIV Entry Inhibitors.Advances in experimental medicine and biology · 2022
    Article
  4. Peptide-Based Antiviral Drugs.Advances in experimental medicine and biology · 2021
    Article
  5. Review
  6. Article
  7. Review
  8. Pharmacokinetic stability of macrocyclic peptide triazole HIV-1 inactivators alone and in liposomes.Journal of peptide science : an official publication of the European Peptide Society · 2019
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Click chemistry in peptide-based drug design.Molecules (Basel, Switzerland) · 2013
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 1 institution in 1 country.

Hosahudya GopiDepartment of Biochemistry and Molecular Biology, Drexel University College of Medicine, Philadelphia, Pennsylvania 19102, USA.
M Umashankara
Vanessa Pirrone
Judith LaLonde
Navid Madani
Ferit Tuzer
Sabine Baxter
Isaac Zentner
Simon Cocklin
Navneet Jawanda
Shendra R Miller
Arne Schön
Jeffrey C Klein
Ernesto Freire
Fred C Krebs
Amos B Smith
Joseph Sodroski
Irwin Chaiken
Drexel University · US

Funding

Understanding Envelope Function in HIV-1 Infection: The Design, Synthesis and Validation of Small Molecule HIV-1 Env InhibitorsP01GM056550 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI ABRAMS, CAMERON F · 1997 to 2018
$31.2M
CVN-12p1 Chimeras and Combinations for AIDS MicrobiocidesR21AI071965 · NIAID · DREXEL UNIVERSITY · PI CHAIKEN, IRWIN M · 2006 to 2007
$389k
NIAID NIH HHS R21 AI071965NIGMS NIH HHS P01 GM056550NIGMS NIH HHS P01 GM56550
6 · The paper itself

Abstract

Structure-activity correlations were investigated for substituted peptide conjugates that function as dual receptor site antagonists of HIV-1 gp120. A series of peptide conjugates were constructed via click reaction of both aryl and alkyl acetylenes with an internally incorporated azidoproline 6 derived from the parent peptide 1 (12p1, RINNIPWSEAMM). Compared to 1, many of these conjugates were found to exhibit several orders of magnitude increase in both affinity for HIV-1 gp120 and inhibition potencies at both the CD4 and coreceptor binding sites of gp120. We sought to determine structural factors in the added triazole grouping responsible for the increased binding affinity and antiviral activity of the dual inhibitor conjugates. We measured peptide conjugate potencies in both kinetic and cell infection assays. High affinity was sterically specific, being exhibited by the cis- but not the trans-triazole. The results demonstrate that aromatic, hydrophobic, and steric features in the residue 6 side-chain are important for increased affinity and inhibition. Optimizing these features provides a basis for developing gp120 dual inhibitors into peptidomimetic and increasingly smaller molecular weight entry antagonist leads.

Indexed as

Antibodies, MonoclonalAnti-HIV AgentsBinding SitesCD4 AntigensCell LineHIV-1HIV AntibodiesHIV Envelope Protein gp120HumansMolecular MimicryPeptidesProtein BindingStereoisomerismStructure-Activity RelationshipTriazolesVirus InternalizationAntibodies, MonoclonalAnti-HIV AgentsCD4 Antigensgp120 protein, Human immunodeficiency virus 1HIV AntibodiesHIV Envelope Protein gp120PeptidesTriazoles

Identifiers

PMID18402432
PMCPMC2921370
OpenAlexW2038698467

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.