Evidence map›Paper›PMID 18400856›Full record

ArticleJournal of virology2008

Critical role of conserved hydrophobic residues within the major homology region in mature retroviral capsid assembly.

John G Purdy, John M Flanagan, Ira J Ropson, Kristen E Rennoll-Bankert, Rebecca C Craven

Abstract read
In one paragraph

Article in Journal of virology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

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  19. Article
  20. Assembly and architecture of HIV.Advances in experimental medicine and biology · 2012
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

John G PurdyDepartment of Microbiology and Immunology, The Pennsylvania State University College of Medicine, 500 University Drive, Hershey, PA 17033, USA.
John M Flanagan
Ira J Ropson
Kristen E Rennoll-Bankert
Rebecca C Craven

Funding

Interactions of the CA Protein in the Retrovirus CoreR01CA100322 · NCI · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI CRAVEN, REBECCA C. · 2003 to 2013
$2.5M
NCI NIH HHS CA100322NCI NIH HHS R01 CA100322
6 · The paper itself

Abstract

During retroviral maturation, the CA protein undergoes dramatic structural changes and establishes unique intermolecular interfaces in the mature capsid shell that are different from those that existed in the immature precursor. The most conserved region of CA, the major homology region (MHR), has been implicated in both immature and mature assembly, although the precise contribution of the MHR residues to each event has been largely undefined. To test the roles of specific MHR residues in mature capsid assembly, an in vitro system was developed that allowed for the first-time formation of Rous sarcoma virus CA into structures resembling authentic capsids. The ability of CA to assemble organized structures was destroyed by substitutions of two conserved hydrophobic MHR residues and restored by second-site suppressors, demonstrating that these MHR residues are required for the proper assembly of mature capsids in addition to any role that these amino acids may play in immature particle assembly. The defect caused by the MHR mutations was identified as an early step in the capsid assembly process. The results provide strong evidence for a model in which the hydrophobic residues of the MHR control a conformational reorganization of CA that is needed to initiate capsid assembly and suggest that the formation of an interdomain interaction occurs early during maturation.

Indexed as

Virus AssemblyAmino Acid SequenceAmino Acid SubstitutionCapsidCapsid ProteinsCircular DichroismHydrophobic and Hydrophilic InteractionsModels, ChemicalMolecular Sequence DataProtein DenaturationProtein Structure, SecondaryProtein Structure, TertiaryRetroviridaeRous sarcoma virusSequence Homology, Amino AcidSpectrophotometry, UltravioletCapsid ProteinsTryptophan

Identifiers

PMID18400856
PMCPMC2395126

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.