Evidence map›Paper›PMID 18400565›Full record

ArticleDNA repair2008

Identification of pathways controlling DNA damage induced mutation in Saccharomyces cerevisiae.

Ewa T Lis, Bryan M O'Neill, Cristina Gil-Lamaignere, Jodie K Chin, Floyd E Romesberg

Open access · greenAbstract read
In one paragraph

Article in DNA repair, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
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  8. Review
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  10. Colon cancer-associated mutator DNA polymerase δ variant causes expansion of dNTP pools increasing its own infidelity.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  11. Review
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  16. The availableThe Internet journal of microbiology · 2009
    Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Ewa T LisDepartment of Chemistry, The Scripps Research Institute, CB262R, 10550N. Torrey Pines Road, La Jolla, CA 92037, United States.
Bryan M O'Neill
Cristina Gil-Lamaignere
Jodie K Chin
Floyd E Romesberg
Scripps Research Institute · US

Funding

Pathways Controlling Genome Stability and MutationR01GM068569 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI ROMESBERG, FLOYD E. · 2004 to 2007
$1.4M
NIGMS NIH HHS GM65869NIGMS NIH HHS R01 GM068569
6 · The paper itself

Abstract

Mutation in response to most types of DNA damage is thought to be mediated by the error-prone sub-branch of post-replication repair and the associated translesion synthesis polymerases. To further understand the mutagenic response to DNA damage, we screened a collection of 4848 haploid gene deletion strains of Saccharomyces cerevisiae for decreased damage-induced mutation of the CAN1 gene. Through extensive quantitative validation of the strains identified by the screen, we identified ten genes, which included error-prone post-replication repair genes known to be involved in induced mutation, as well as two additional genes, FYV6 and RNR4. We demonstrate that FYV6 and RNR4 are epistatic with respect to induced mutation, and that they function, at least partially, independently of post-replication repair. This pathway of induced mutation appears to be mediated by an increase in dNTP levels that facilitates lesion bypass by the replicative polymerase Pol delta, and it is as important as error-prone post-replication repair in the case of UV- and MMS-induced mutation, but solely responsible for EMS-induced mutation. We show that Rnr4/Pol delta-induced mutation is efficiently inhibited by hydroxyurea, a small molecule inhibitor of ribonucleotide reductase, suggesting that if similar pathways exist in human cells, intervention in some forms of mutation may be possible.

Indexed as

Amino Acid Transport Systems, BasicDNA DamageDNA, FungalDNA Polymerase IIIEnzyme InhibitorsGene DeletionHydroxyureaMutagenesisMutationRibonucleoside Diphosphate ReductaseSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsAmino Acid Transport Systems, BasicCAN1 protein, S cerevisiaeDNA, FungalDNA Polymerase IIIEnzyme InhibitorsHydroxyureaRibonucleoside Diphosphate ReductaseRnr4 protein, S cerevisiaeSaccharomyces cerevisiae Proteins

Identifiers

PMID18400565
PMCPMC2441895
OpenAlexW2070794624

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.