Evidence map›Paper›PMID 18393454›Full record

ArticleBioconjugate chemistry2008

High-throughput method for ranking the affinity of peptide ligands selected from phage display libraries.

A González-Techera, M Umpiérrez-Failache, S Cardozo, G Obal, O Pritsch, J A Last, S J Gee, B D Hammock, G González-Sapienza

Open access · greenAbstract read
In one paragraph

Article in Bioconjugate chemistry, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Evolving a Peptide: Library Platforms and Diversification Strategies.International journal of molecular sciences · 2019
    Review
  3. Article
  4. Article
  5. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

A González-TecheraCátedra de Inmunología, Facultad de Química, Instituto de Higiene, and Departamento de Inmunobiología, Facultad de Medicina, UDELAR, Montevideo, Uruguay.
M Umpiérrez-Failache
S Cardozo
G Obal
O Pritsch
J A Last
S J Gee
B D Hammock
G González-Sapienza
Institut Pasteur de Montevideo · UY

Funding

Workshop on Environmental Technology Transfer and EntrepreneurshipP42ES004699 · NIEHS · UNIVERSITY OF CALIFORNIA DAVIS · PI HAMMOCK, BRUCE D · 1987 to 2021
$50.1M
NIEHS Center for Health Effects of AgrochemicalsP30ES005707 · NIEHS · UNIVERSITY OF CALIFORNIA DAVIS · PI MATSUMURA, FUMIO NONE · 1992 to 2006
$9.9M
International Training Program in Environmental Toxicology and Public HealthD43TW005718 · FIC · UNIVERSITY OF CALIFORNIA DAVIS · PI LAST, JEROLD ALAN · 2001 to 2011
$1.7M
FIC NIH HHS D43 TW005718FIC NIH HHS TW05718NIEHS NIH HHS P30 ES005707NIEHS NIH HHS P30 ES05707NIEHS NIH HHS P42 ES004699NIEHS NIH HHS P42 ES04699
6 · The paper itself

Abstract

The use of phage display peptide libraries allows rapid isolation of peptide ligands for any target selector molecule. However, due to differences in peptide expression and the heterogeneity of the phage preparations, there is no easy way to compare the binding properties of the selected clones, which operates as a major "bottleneck" of the technology. Here, we present the development of a new type of library that allows rapid comparison of the relative affinity of the selected peptides in a high-throughput screening format. As a model system, a phage display peptide library constructed on a phagemid vector that contains the bacterial alkaline phosphatase gene (BAP) was selected with an antiherbicide antibody. Due to the intrinsic switching capacity of the library, the selected peptides were transferred "en masse" from the phage coat protein to BAP. This was coupled to an optimized affinity ELISA where normalized amounts of the peptide-BAP fusion allow direct comparison of the binding properties of hundreds of peptide ligands. The system was validated by plasmon surface resonance experiments using synthetic peptides, showing that the method discriminates among the affinities of the peptides within 3 orders of magnitude. In addition, the peptide-BAP protein can find direct application as a tracer reagent.

Indexed as

Peptide LibraryAlkaline PhosphataseAntibodies, MonoclonalAntibody AffinityBinding, CompetitiveCloning, MolecularEnzyme-Linked Immunosorbent AssayEscherichia coliGenetic VectorsLigandsModels, MolecularPeptidesProtein BindingRecombinant Fusion ProteinsSensitivity and SpecificitySurface Plasmon ResonanceAlkaline PhosphataseAntibodies, MonoclonalLigandsPeptide LibraryPeptidesRecombinant Fusion Proteins

Identifiers

PMID18393454
PMCPMC2863005
OpenAlexW2140403559

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.