ArticleMolecular genetics and genomics : MGG2008
Characterization of chromosome ends on the basis of the structure of TrsA subtelomeric repeats in rice (Oryza sativa L.).
Article in Molecular genetics and genomics : MGG, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
7 citing papers in PubMed.
- Telomere and subtelomere high polymorphism might contribute to the specificity of homologous recognition and pairing during meiosis in barley in the context of breeding.BMC genomics · 2023Article
- Genome-wide specificity of prime editors in plants.Nature biotechnology · 2021Article
- Telomeres and Subtelomeres Dynamics in the Context of Early Chromosome Interactions During Meiosis and Their Implications in Plant Breeding.Frontiers in plant science · 2021Review
- Sequence analysis of wheat subtelomeres reveals a high polymorphism among homoeologous chromosomes.The plant genome · 2020Article
- The Nipponbare genome and the next-generation of rice genomics research in Japan.Rice (New York, N.Y.) · 2016Review
- The Subtelomeric khipu Satellite Repeat from Phaseolus vulgaris: Lessons Learned from the Genome Analysis of the Andean Genotype G19833.Frontiers in plant science · 2013Article
- Asymmetric distribution of gene expression in the centromeric region of rice chromosome 5.Frontiers in plant science · 2011Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Subtelomeres contain species-specific repetitive sequences. We characterized rice chromosome ends on the basis of the structure of TrsA, a subtelomeric repetitive sequence of rice. Among the 24 chromosome arms, TrsA was arrayed in tandem on the ends of five: 5L, 6S, 8L, 9L, and 12L. TrsA sequences were arranged in discrete clusters of 3-106 copies in a chromosome-specific manner, instead of being distributed uniformly throughout the subtelomeric regions. The clusters were located at the distal-most end of the sequenced region in 5L, 6S, 8L, and 9L, but in 12L expressed genes were present distal to the clusters. Thus, rice subtelomeres are composed of discrete clusters of a TrsA-rich region and a gene-rich region with high transcriptional activity. Intra-chromosomal duplications have resulted in a striking degree of variation in the number and distribution of TrsAs, suggesting that the areas near the ends of the chromosomes are dynamic and variable.
Indexed as
Identifiers
18392854What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.