Evidence map›Paper›PMID 18392762›Full record

ArticleJournal of molecular evolution2008

Type II opsins: evolutionary origin by internal domain duplication?

Nicholas D Larusso, Brian E Ruttenberg, Ambuj K Singh, Todd H Oakley

Abstract read
PubMed Publisher
In one paragraph

Article in Journal of molecular evolution, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.8field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 38 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. An empirical test of convergent evolution in rhodopsins.Molecular biology and evolution · 2014
    Article
  6. Relocating the active-site lysine in rhodopsin and implications for evolution of retinylidene proteins.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  7. Article
  8. Article
  9. Review
  10. The evolution of eyes and visually guided behaviour.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2009
    Review
  11. Eye evolution: common use and independent recruitment of genetic components.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2009
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Nicholas D LarussoDepartment of Computer Science, University of California, Santa Barbara, CA 93106, USA.
Brian E Ruttenberg
Ambuj K Singh
Todd H Oakley
University of California, Santa Barbara · USUniversity of California System · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Opsins are a large group of proteins with seven transmembrane segments (TMSs) that are found in all domains of life. There are two types of opsins that are sometimes considered nonhomologous: type I is known from prokaryotes and some eukaryotes, while type II is known only from Eumetazoan animals. Type II opsins are members of the family of G-protein coupled receptors (GPCRs), which facilitate signal transduction across cell membranes. While previous studies have concluded that multiple transmembrane-containing protein families-including type I opsins-originated by internal domain duplication, the origin of type II opsins has been speculated on but never tested. Here we show that type II opsins do not appear to have originated through a similar internal domain duplication event. This provides further evidence that the two types of opsins are nonhomologous, indicating a convergent evolutionary origin, in which both groups of opsins evolved a seven-TM structure and light sensitivity independently. This convergence may indicate an important role for seven-TM protein structure for retinal-based light sensitivity.

Indexed as

Evolution, MolecularAlgorithmsAmino Acid SequenceAnimalsBinding SitesGene DuplicationHumansMolecular Sequence DataRod OpsinsSequence Homology, Amino AcidRod Opsins

Identifiers

PMID18392762
OpenAlexW2120142390

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.