Evidence map›Paper›PMID 18390658›Full record

ArticleJournal of bacteriology2008

Insight from TonB hybrid proteins into the mechanism of iron transport through the outer membrane.

Wallace A Kaserer, Xiaoxu Jiang, Qiaobin Xiao, Daniel C Scott, Matthew Bauler, Daniel Copeland, Salete M C Newton, Phillip E Klebba

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 48 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Analysis of SixInfection and immunity · 2022
    Article
  6. The Ton Motor.Frontiers in microbiology · 2022
    Review
  7. Article
  8. Review
  9. Article
  10. Structure and Stoichiometry of the Ton Molecular Motor.International journal of molecular sciences · 2020
    Review
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Energy-dependent motion of TonB in the Gram-negative bacterial inner membrane.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Wallace A KasererDepartment of Chemistry and Biochemistry, University of Oklahoma, 620 Parrington Oval, Norman, OK 73019, USA.
Xiaoxu Jiang
Qiaobin Xiao
Daniel C Scott
Matthew Bauler
Daniel Copeland
Salete M C Newton
Phillip E Klebba
University of Oklahoma · US

Funding

LOOP DELETION MUTAGENESIS OF FEPAR01GM053836 · NIGMS · UNIVERSITY OF OKLAHOMA NORMAN · PI KLEBBA, PHILLIP E · 1995 to 2009
$2.4M
NIGMS NIH HHS GM53836NIGMS NIH HHS R01 GM053836
6 · The paper itself

Abstract

We created hybrid proteins to study the functions of TonB. We first fused the portion of Escherichia coli tonB that encodes the C-terminal 69 amino acids (amino acids 170 to 239) of TonB downstream from E. coli malE (MalE-TonB69C). Production of MalE-TonB69C in tonB(+) bacteria inhibited siderophore transport. After overexpression and purification of the fusion protein on an amylose column, we proteolytically released the TonB C terminus and characterized it. Fluorescence spectra positioned its sole tryptophan (W213) in a weakly polar site in the protein interior, shielded from quenchers. Affinity chromatography showed the binding of the TonB C-domain to other proteins: immobilized TonB-dependent (FepA and colicin B) and TonB-independent (FepADelta3-17, OmpA, and lysozyme) proteins adsorbed MalE-TonB69C, revealing a general affinity of the C terminus for other proteins. Additional constructions fused full-length TonB upstream or downstream of green fluorescent protein (GFP). TonB-GFP constructs had partial functionality but no fluorescence; GFP-TonB fusion proteins were functional and fluorescent. The activity of the latter constructs, which localized GFP in the cytoplasm and TonB in the cell envelope, indicate that the TonB N terminus remains in the inner membrane during its biological function. Finally, sequence analyses revealed homology in the TonB C terminus to E. coli YcfS, a proline-rich protein that contains the lysin (LysM) peptidoglycan-binding motif. LysM structural mimicry occurs in two positions of the dimeric TonB C-domain, and experiments confirmed that it physically binds to the murein sacculus. Together, these findings infer that the TonB N terminus remains associated with the inner membrane, while the downstream region bridges the cell envelope from the affinity of the C terminus for peptidoglycan. This architecture suggests a membrane surveillance model of action, in which TonB finds occupied receptor proteins by surveying the underside of peptidoglycan-associated outer membrane proteins.

Indexed as

Amino Acid SequenceBiological Transport, ActiveCell MembraneCloning, MolecularEscherichia coliEscherichia coli ProteinsFluorescenceGene Expression Regulation, BacterialIronMembrane ProteinsMolecular Sequence DataRecombinant ProteinsEscherichia coli ProteinsIronMembrane ProteinsRecombinant ProteinstonB protein, E coli

Identifiers

PMID18390658
PMCPMC2395051
OpenAlexW2151761446

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.