Evidence map›Paper›PMID 18390597›Full record

ArticleBiophysical journal2008

Single-molecule force spectroscopy reveals a stepwise unfolding of Caenorhabditis elegans giant protein kinase domains.

Dina N Greene, Tzintzuni Garcia, R Bryan Sutton, Kim M Gernert, Guy M Benian, Andres F Oberhauser

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
4.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 47 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Single-particle virology.Biophysical reviews · 2020
    Review
  5. Probing Changes in CaMicromachines · 2020
    Article
  6. Article
  7. Molecular stretching modulates mechanosensing pathways.Protein science : a publication of the Protein Society · 2017
    Review
  8. Twitchin kinase inhibits muscle activity.Molecular biology of the cell · 2017
    Article
  9. Article
  10. Review
  11. Article
  12. Identification of an N-terminal inhibitory extension as the primary mechanosensory regulator of twitchin kinase.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
  13. Article
  14. Cytoskeletal protein kinases: titin and its relations in mechanosensing.Pflugers Archiv : European journal of physiology · 2011
    Review
  15. A force-activated kinase in a catch smooth muscle.Journal of muscle research and cell motility · 2011
    Article
  16. Deconvolution of dynamic mechanical networks.Proceedings of the National Academy of Sciences of the United States of America · 2010
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Dina N GreeneDepartment of Pathology, Emory University School of Medicine, Atlanta, Georgia, 30322, USA.
Tzintzuni Garcia
R Bryan Sutton
Kim M Gernert
Guy M Benian
Andres F Oberhauser
Emory University · USThe University of Texas Medical Branch at Galveston · US

Funding

TRAINING PROGRAM IN COMPUTATIONAL BIOLOGY AND MEDICINET15LM007093 · NLM · RICE UNIVERSITY · PI Lydia E. Kavraki · 1992 to 2026
$20.8M
The Nano-mechanics of Polycystin-1R01DK073394 · NIDDK · UNIVERSITY OF TEXAS MED BR GALVESTON · PI OBERHAUSER, ANDRES F. · 2006 to 2010
$1.2M
Using C. elegans to study titin and obscurin (UNC-89)R01AR051466 · NIAMS · EMORY UNIVERSITY · PI BENIAN, GUY MARTIN · 2004 to 2009
$1.2M
NIAMS NIH HHS R01 AR051466NIAMS NIH HHS R01AR051466NIDDK NIH HHS R01 DK073394NIDDK NIH HHS R01DK073394NLM NIH HHS 5T15LM07093NLM NIH HHS T15 LM007093
6 · The paper itself

Abstract

Myofibril assembly and disassembly are complex processes that regulate overall muscle mass. Titin kinase has been implicated as an initiating catalyst in signaling pathways that ultimately result in myofibril growth. In titin, the kinase domain is in an ideal position to sense mechanical strain that occurs during muscle activity. The enzyme is negatively regulated by intramolecular interactions occurring between the kinase catalytic core and autoinhibitory/regulatory region. Molecular dynamics simulations suggest that human titin kinase acts as a force sensor. However, the precise mechanism(s) resulting in the conformational changes that relieve the kinase of this autoinhibition are unknown. Here we measured the mechanical properties of the kinase domain and flanking Ig/Fn domains of the Caenorhabditis elegans titin-like proteins twitchin and TTN-1 using single-molecule atomic force microscopy. Our results show that these kinase domains have significant mechanical resistance, unfolding at forces similar to those for Ig/Fn beta-sandwich domains (30-150 pN). Further, our atomic force microscopy data is consistent with molecular dynamic simulations, which show that these kinases unfold in a stepwise fashion, first an unwinding of the autoinhibitory region, followed by a two-step unfolding of the catalytic core. These data support the hypothesis that titin kinase may function as an effective force sensor.

Indexed as

Models, ChemicalModels, MolecularCaenorhabditis elegans ProteinsCalmodulin-Binding ProteinsComputer SimulationMicroscopy, Atomic ForceMotionMuscle ProteinsProtein ConformationProtein DenaturationProtein FoldingProtein KinasesProtein Structure, TertiaryStress, MechanicalCaenorhabditis elegans ProteinsCalmodulin-Binding ProteinsMuscle ProteinsProtein Kinasesunc-22 protein, C elegans

Identifiers

PMID18390597
PMCPMC2479574
OpenAlexW2072983476

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.