Evidence map›Paper›PMID 18390596›Full record

ArticleBiophysical journal2008

Synthetic nanopores as a test case for ion channel theories: the anomalous mole fraction effect without single filing.

Dirk Gillespie, Dezso Boda, Yan He, Pavel Apel, Zuzanna S Siwy

Abstract read
In one paragraph

Article in Biophysical journal, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Article
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  5. Ion selectivity of graphene nanopores.Nature communications · 2016
    Article
  6. Fabrication of Nanochannels.Materials (Basel, Switzerland) · 2015
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Dirk GillespieDepartment of Molecular Biophysics and Physiology, Rush University Medical Center, Chicago, Illinois, USA. dirk_gillespie@rush.edu
Dezso Boda
Yan He
Pavel Apel
Zuzanna S Siwy

Funding

Skeletal Muscle Ryanodine Receptor Permeation and Self Counter-Ion FlowR01AR054098 · NIAMS · RUSH UNIVERSITY MEDICAL CENTER · PI FILL, MICHAEL · 2007 to 2017
$2.9M
Simulations of Calcium Selectivity and BindingR01GM076013 · NIGMS · RUSH UNIVERSITY MEDICAL CENTER · PI EISENBERG, ROBERT S. · 2006 to 2009
$1.5M
NIAMS NIH HHS AR054098NIAMS NIH HHS R01 AR054098NIGMS NIH HHS GM076013NIGMS NIH HHS R01 GM076013
6 · The paper itself

Abstract

The predictions of a theory for the anomalous mole fraction effect (AMFE) are tested experimentally with synthetic nanopores in plastic. The negatively charged synthetic nanopores under consideration are highly cation selective and 50 A in diameter at their smallest point. These pores exhibit an AMFE in mixtures of Ca(2+) and monovalent cations. An AMFE occurs when the conductance through a pore is lower in a mixture of salts than in the pure salts at the same concentration. For ion channels, the textbook interpretation of the AMFE is that multiple ions move through the pore in coordinated, single-file motion. However, because the synthetic nanopores are so wide, their AMFE shows that single filing is not necessary for the AMFE. It is shown that the AMFE in the synthetic nanopores is explained by a theory of preferential ion selectivity. The unique properties of the synthetic nanopores allow us to experimentally confirm several predictions of this theory. These same properties make synthetic nanopores an interesting new platform to test theories of ion channel permeation and selectivity in general.

Indexed as

Ion Channel GatingModels, ChemicalBiomimetic MaterialsComputer SimulationIon ChannelsModels, MolecularNanostructuresPorosityIon Channels

Identifiers

PMID18390596
PMCPMC2440478

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.