Evidence map›Paper›PMID 18387595›Full record

ArticleAmerican journal of human genetics2008

On the replication of genetic associations: timing can be everything!

Jessica Lasky-Su, Helen N Lyon, Valur Emilsson, Iris M Heid, Cliona Molony, Benjamin A Raby, Ross Lazarus, Barbara Klanderman, Manuel E Soto-Quiros, Lydiana Avila and 23 more

Registry-linked trialOpen access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT00021840 (Genetic Epidemiology of Asthma in Costa Rica), which is not on this map. Cited by 82 papers, 8 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
82citing papers in PubMed, 8 pooled it
13.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT00021840 completednot on this map

Genetic Epidemiology of Asthma in Costa Rica

TypeobservationalSponsorBrigham and Women's HospitalRan2001 to 2011Enrolled4,245ConditionsAsthma, Lung Diseases
3 · Its place in the literature

Who cites it

82 citing papers in PubMed, 8 syntheses or guidelines pooled it, 134 citations in OpenAlex.

  1. Pooled it
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  9. Trial
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Variability in Pediatric Ideal Body Weight Calculation: Implications for Lung-Protective Mechanical Ventilation Strategies in Pediatric Acute Respiratory Distress Syndrome.Pediatric critical care medicine : a journal of the Society of Critical Care Medicine and the World Federation of Pediatric Intensive and Critical Care Societies · 2018
    Observational
  16. Novel eosinophilic gene expression networks associated with IgE in two distinct asthma populations.Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology · 2018
    Article
  17. Article
  18. Article
  19. Article
  20. Transferability of genome-wide associated loci for asthma in African Americans.The Journal of asthma : official journal of the Association for the Care of Asthma · 2017
    Article

22 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

33 authors at 15 institutions in 6 countries.

Jessica Lasky-SuSUNY Upstate Medical University, Syracuse, NY 13210, USA. jessica.a.su@gmail.com
Helen N Lyon
Valur Emilsson
Iris M Heid
Cliona Molony
Benjamin A Raby
Ross Lazarus
Barbara Klanderman
Manuel E Soto-Quiros
Lydiana Avila
Edwin K Silverman
Gudmar Thorleifsson
Unnur Thorsteinsdottir
Florian Kronenberg
Caren Vollmert
Thomas Illig
Caroline S Fox
Daniel Levy
Nan Laird
Xiao Ding
Matt B McQueen
Johannah Butler
Kristin Ardlie
Constantina Papoutsakis
George Dedoussis
Christopher J O'Donnell
H-Erich Wichmann
Juan C Celedón
Eric Schadt
Joel Hirschhorn
Scott T Weiss
Kari Stefansson
Christoph Lange
Harvard University · USdeCODE Genetics (Iceland) · ISBrigham and Women's Hospital · USBoston Children's Hospital · USHarokopio University of Athens · GRHospital Nacional de Niños · CRInstitute of Groundwater Ecology · DENational Heart Lung and Blood Institute · USRosetta Stone (United States) · USZimmer Biomet (Germany) · DEBroad Institute · USFramingham Heart Study · USInnsbruck Medical University · ATSUNY Upstate Medical University · USUniversity of Colorado Boulder · US

Funding

Framingham Project/LevyZIAHL006001 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI LEVY, DANIEL · 2009 to 2025
$51.1M
THE PHARMACOGENETICS OF ASTHMA TREATMENTU01HL065899 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI TANTISIRA, KELAN G, WEISS, SCOTT T · 2000 to 2014
$38.5M
The Genetic Epidemiology of Asthma in Costa RicaR37HL066289 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI WEISS, SCOTT T · 2007 to 2015
$14.6M
Statistical GeneticsP01HL083069 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI WEISS, SCOTT T · 2007 to 2011
$12.2M
THE GENETIC EPIDEMIOLOGY OF ASTHMA IN COSTA RICAR01HL066289 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI WEISS, SCOTT T · 2001 to 2005
$5.2M
Social Demographic Moderation of Genome Wide Associations for Body Mass IndexR01HD060726 · NICHD · UNIVERSITY OF COLORADO · PI BOARDMAN, JASON D, MCQUEEN, MATTHEW B · 2010 to 2014
$2.7M
CLINICAL CENTER FOR CAMPN01HR016049 · HR · BRIGHAM AND WOMEN'S HOSPITAL · PI WEISS, SCOTT T · 1991 to 2000
$1.0M
Framingham Project/O'DonnellZ01HL006002 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI O'DONNELL, CHRISTOPHER · 2008 to 2008
$802k
CLINICAL COORDINATING CENTER FOR CAMPN01HR016044 · HR · JOHNS HOPKINS UNIVERSITY · PI TONASCIA, JAMES A · 1991 to 2006
$729k
The Genetic Epidemiology of Asthma in Costa RicaK01HL004370 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI CELEDON, JUAN CARLOS · 2001 to 2005
$697k
CLINICAL CENTER FOR CAMPN01HR016052 · HR · JOHNS HOPKINS UNIVERSITY · PI ADKINSON, N FRANKLIN · 1991 to 2000
$0k
CLINICAL CENTER FOR CAMPN01HR016051 · HR · WASHINGTON UNIVERSITY · PI STRUNK, ROBERT C · 1991 to 2000
$0k
NHLBI NIH HHS HL04370NHLBI NIH HHS HL066289NHLBI NIH HHS K01 HL004370NHLBI NIH HHS N01 HC025195NHLBI NIH HHS N01-HC-25195NHLBI NIH HHS N01 HR016044NHLBI NIH HHS N01-HR-16044NHLBI NIH HHS N01-HR-16045NHLBI NIH HHS N01-HR-16046NHLBI NIH HHS N01-HR-16047NHLBI NIH HHS N01-HR-16048NHLBI NIH HHS N01-HR-16049NHLBI NIH HHS N01-HR-16050NHLBI NIH HHS N01-HR-16051NHLBI NIH HHS N01-HR-16052NHLBI NIH HHS P01 HL083069NHLBI NIH HHS P01HL083069NHLBI NIH HHS R01 HL066289NHLBI NIH HHS R37 HL066289NHLBI NIH HHS U01 HL065899NHLBI NIH HHS U01 HL65899NICHD NIH HHS R01 HD060726
6 · The paper itself

Abstract

The failure of researchers to replicate genetic-association findings is most commonly attributed to insufficient statistical power, population stratification, or various forms of between-study heterogeneity or environmental influences.(1) Here, we illustrate another potential cause for nonreplications that has so far not received much attention in the literature. We illustrate that the strength of a genetic effect can vary by age, causing "age-varying associations." If not taken into account during the design and the analysis of a study, age-varying genetic associations can cause nonreplication. By using the 100K SNP scan of the Framingham Heart Study, we identified an age-varying association between a SNP in ROBO1 and obesity and hypothesized an age-gene interaction. This finding was followed up in eight independent samples comprising 13,584 individuals. The association was replicated in five of the eight studies, showing an age-dependent relationship (one-sided combined p = 3.92 x 10(-9), combined p value from pediatric cohorts = 2.21 x 10(-8), combined p value from adult cohorts = 0.00422). Furthermore, this study illustrates that it is difficult for cross-sectional study designs to detect age-varying associations. If the specifics of age- or time-varying genetic effects are not considered in the selection of both the follow-up samples and in the statistical analysis, important genetic associations may be missed.

Indexed as

Body Mass IndexGenetic LinkageGenetic Predisposition to DiseasePolymorphism, Single NucleotideAdolescentAdultAgedAged, 80 and overAge FactorsChildChild, PreschoolCohort StudiesCross-Sectional StudiesFemaleGene FrequencyGenetic TestingNerve Tissue ProteinsReceptors, ImmunologicRoundabout Proteins

Identifiers

PMID18387595
PMCPMC2427263
OpenAlexW1978580001

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.