Evidence map›Paper›PMID 18385246›Full record

ArticleJournal of virology2008

Different mutational pathways to CXCR4 coreceptor switch of CCR5-using simian-human immunodeficiency virus.

Siu-hong Ho, Nataliya Trunova, Agegnehu Gettie, James Blanchard, Cecilia Cheng-Mayer

Abstract read
In one paragraph

Article in Journal of virology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Trial
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Coreceptor use in nonhuman primate models of HIV infection.Journal of translational medicine · 2011
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. How HIV changes its tropism: evolution and adaptation?Current opinion in HIV and AIDS · 2009
    Review
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Siu-hong HoAaron Diamond AIDS Research Center, The Rockefeller University, 455 First Ave., 7th Floor, New York, NY 10016, USA.
Nataliya Trunova
Agegnehu Gettie
James Blanchard
Cecilia Cheng-Mayer

Funding

TRANSMISSION &PATHOGENESIS OF X4 &R5 SHIVSR01AI046980 · NIAID · AARON DIAMOND AIDS RESEARCH CENTER · PI CHENG-MAYER, CECILIA C · 2000 to 2009
$6.0M
Simian Immunodeficiency VIrus PathogenesisR37AI041945 · NIAID · AARON DIAMOND AIDS RESEARCH CENTER · PI CHENG-MAYER, CECILIA C · 2001 to 2010
$5.0M
NIAID NIH HHS R01 AI046980NIAID NIH HHS R01 AI46980NIAID NIH HHS R37 AI041945NIAID NIH HHS R37AI41945NIMHD NIH HHS L60 MD003100
6 · The paper itself

Abstract

We report here a second case of coreceptor switch in R5 simian-human immunodeficiency virus SF162P3N (SHIV(SF162P3N))-infected macaque CA28, supporting the use of this experimental system to examine factors that drive the change in coreceptor preference in vivo. Virus recovered from CA28 plasma (SHIV(CA28NP)) used both CCR5 and CXCR4 for entry, but the virus recovered from lymph node (SHIV(CA28NL)) used CXCR4 almost exclusively. Sequence and functional analyses showed that mutations in the V3 loop that conferred CXCR4 usage in macaque CA28 differed from those described in the previously reported case, demonstrating divergent mutational pathways for change in the coreceptor preference of the R5 SHIV(SF162P3N) isolate in vivo.

Indexed as

Amino Acid SequenceAnimalsCD4-Positive T-LymphocytesLymphocyte CountMacaca mulattaMolecular Sequence DataMutationReceptors, CCR5Receptors, CXCR4Simian Immunodeficiency VirusViral ProteinsReceptors, CCR5Receptors, CXCR4Viral Proteins

Identifiers

PMID18385246
PMCPMC2395221

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.