Evidence map›Paper›PMID 18385074›Full record

ArticleInvestigative ophthalmology & visual science2008

Dual roles for Prox1 in the regulation of the chicken betaB1-crystallin promoter.

Xiaoren Chen, Jennifer R Taube, Vladimir I Simirskii, Tapan P Patel, Melinda K Duncan

Open access · greenAbstract read
In one paragraph

Article in Investigative ophthalmology & visual science, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 22 citations in OpenAlex.

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  12. Pitx3 controls multiple aspects of lens development.Developmental dynamics : an official publication of the American Association of Anatomists · 2009
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Xiaoren ChenDepartment of Biological Sciences, University of Delaware, Newark, Delaware 19716, USA.
Jennifer R Taube
Vladimir I Simirskii
Tapan P Patel
Melinda K Duncan
University of Delaware · US

Funding

The Regulation of Lens Fiber Cell DifferentiationR01EY012221 · NEI · UNIVERSITY OF DELAWARE · PI DUNCAN, MELINDA K · 1998 to 2012
$3.7M
NEI NIH HHS EY012221NEI NIH HHS R01 EY012221
6 · The paper itself

Abstract

purposeLens fiber cell differentiation is marked by the onset of betaB1-crystallin expression and is controlled by the cooperative action of a set of transcription factors including Prox1, an atypical homeodomain protein. Previously, the authors reported that Prox1 directly interacts with the OL2 element found in the chicken betaB1-crystallin basal promoter to activate the expression of this gene. Here they mapped the location of activating and repressing sequences of the full-length chicken betaB1-crystallin promoter (-432/+30) in lens epithelial cells, annular pad cells, and intact lens and characterized Prox1-binding sites found in this region.

methodsTransfection analysis and transgenic mice were used to characterize upstream regions of the chicken betaB1-crystallin gene. DNaseI footprinting and chromatin immunoprecipitation was performed to identify Prox1-binding sites, and transfection analyses were used to characterize these sites functionally.

resultsSequences between -152 and -432 of the chicken betaB1-crystallin promoter mediated either promoter activation or repression, depending on the stage of lens differentiation tested. Two new Prox1-binding sites were found in this region that bound Prox1 more avidly than the OL2 element. However, neither binding site conferred Prox1-mediated activation on a heterologous promoter; instead, each allowed Prox1 to repress promoter function.

conclusionsThe function of the upstream region of the chicken betaB1-crystallin promoter changes depending on cellular context. These data suggest that Prox1 function as a transcriptional activator could be regulated at the DNA level based on the characteristics of the responsive elements.

Indexed as

Promoter Regions, GeneticAnimalsbeta-Crystallin B ChainBinding SitesBlotting, WesternChick EmbryoCHO CellsCricetinaeCricetulusElectrophoretic Mobility Shift AssayEpithelial CellsGene Expression RegulationHomeodomain ProteinsLens, CrystallineMiceMice, Transgenicbeta-Crystallin B ChainHomeodomain ProteinsProspero-Related Homeobox 1 ProteinRepressor ProteinsTumor Suppressor Proteins

Identifiers

PMID18385074
PMCPMC2366088
OpenAlexW2051222113

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.