ArticleBMC plant biology2008
Construction of nested genetic core collections to optimize the exploitation of natural diversity in Vitis vinifera L. subsp. sativa.
Article in BMC plant biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.
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39 citing papers in PubMed.
- Characterization of Bunch Compactness in a Diverse Collection ofPlants (Basel, Switzerland) · 2025Article
- Develop a preliminary core germplasm with the novel polymorphism EST-SSRs derived from three transcriptomes of colored calla lily (Frontiers in plant science · 2023Article
- Genetic Characterization by SSR Markers of a Comprehensive Wine Grape Collection Conserved at Rancho de la Merced (Andalusia, Spain).Plants (Basel, Switzerland) · 2022Article
- Candidate genes and SNPs associated with stomatal conductance under drought stress in Vitis.BMC plant biology · 2021Article
- Phenotypic variation, functional traits repeatability and core collection inference in Synsepalum dulcificum (Schumach & Thonn.) Daniell reveals the Dahomey Gap as a centre of diversity.Scientific reports · 2020Article
- Article
- Genetic structure and molecular diversity of Brazilian grapevine germplasm: Management and use in breeding programs.PloS one · 2020Article
- Integration of expert knowledge in the definition of Swiss pear core collection.Scientific reports · 2019Article
- Extended diversity analysis of cultivated grapevine Vitis vinifera with 10K genome-wide SNPs.PloS one · 2018Article
- Identifying the genetic diversity, genetic structure and a core collection of Ziziphus jujuba Mill. var. jujuba accessions using microsatellite markers.Scientific reports · 2016Article
- Genetic diversity, linkage disequilibrium and power of a large grapevine (Vitis vinifera L) diversity panel newly designed for association studies.BMC plant biology · 2016Article
- Genetic diversity, linkage disequilibrium, population structure and construction of a core collection of Prunus avium L. landraces and bred cultivars.BMC plant biology · 2016Article
- Utilization of Molecular, Phenotypic, and Geographical Diversity to Develop Compact Composite Core Collection in the Oilseed Crop, Safflower (Frontiers in plant science · 2016Article
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- Evaluating the Influence of the Microsatellite Marker Set on the Genetic Structure Inferred in Pyrus communis L.PloS one · 2015Article
- Morphological variability in leaves and molecular characterization of novel table grape candidate cultivars (Vitis vinifera L.).Molecular biotechnology · 2014Article
- Developing core collections to optimize the management and the exploitation of diversity of the coffee Coffea canephora.Genetica · 2014Article
- DNA fingerprinting in botany: past, present, future.Investigative genetics · 2014Article
- Validation assay of p3_VvAGL11 marker in a wide range of genetic background for early selection of stenospermocarpy in Vitis vinifera L.Molecular biotechnology · 2013Article
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8 authors.
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Abstract
backgroundThe first high quality draft of the grape genome sequence has just been published. This is a critical step in accessing all the genes of this species and increases the chances of exploiting the natural genetic diversity through association genetics. However, our basic knowledge of the extent of allelic variation within the species is still not sufficient. Towards this goal, we constructed nested genetic core collections (G-cores) to capture the simple sequence repeat (SSR) diversity of the grape cultivated compartment (Vitis vinifera L. subsp. sativa) from the world's largest germplasm collection (Domaine de Vassal, INRA Hérault, France), containing 2262 unique genotypes.
resultsSub-samples of 12, 24, 48 and 92 varieties of V. vinifera L. were selected based on their genotypes for 20 SSR markers using the M-strategy. They represent respectively 58%, 73%, 83% and 100% of total SSR diversity. The capture of allelic diversity was analyzed by sequencing three genes scattered throughout the genome on 233 individuals: 41 single nucleotide polymorphisms (SNPs) were identified using the G-92 core (one SNP for every 49 nucleotides) while only 25 were observed using a larger sample of 141 individuals selected on the basis of 50 morphological traits, thus demonstrating the reliability of the approach.
conclusionThe G-12 and G-24 core-collections displayed respectively 78% and 88% of the SNPs respectively, and are therefore of great interest for SNP discovery studies. Furthermore, the nested genetic core collections satisfactorily reflected the geographic and the genetic diversity of grape, which are also of great interest for the study of gene evolution in this species.
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