Evidence map›Paper›PMID 18379775›Full record

ArticleEuropean biophysics journal : EBJ2008

Analyzing pathogenic mutations of C5 domain from cardiac myosin binding protein C through MD simulations.

Fabio Cecconi, Carlo Guardiani, Roberto Livi

Open access · greenAbstract read
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In one paragraph

Article in European biophysics journal : EBJ, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.2field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Fabio CecconiINFM-SMC and Istituto dei Sistemi Complessi ISC-CNR, Via dei Taurini 19, 00185 Rome, Italy. cecconif@roma1.infn.it
Carlo Guardiani
Roberto Livi
Istituto Nazionale di Fisica Nucleare, Sezione di Firenze · ITInstitute for Complex Systems · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The folding properties of wild type and mutants of domain C5 from cardiac myosin binding protein C have been investigated via molecular dynamics simulations within the framework of a native-centric and coarse-grained model. The relevance of a mutation has been assessed through the shift in the unfolding temperature, the change in the unfolding rate it determines and Phi-values analysis. In a previous paper (Guardiani et al. Biophys J 94:1403-1411, 2008), we performed Kinetic simulations on native contact formation revealing an entropy-driven folding pathway originating near the FG and DE loops. This folding mechanism allowed also a possible interpretation of the molecular impact of the three mutations, Arg14His, Arg28His and Asn115Lys involved in the Familial Hypertrophic Cardiomyopathy. Here we extend that analysis by enriching the mutant pool and we identify a correlation between unfolding rates and the number of native contacts retained in the transition state.

Indexed as

Models, MolecularMutationCardiomyopathy, Hypertrophic, FamilialCarrier ProteinsKineticsMyosin Binding Protein CProtein DenaturationProtein FoldingProtein Structure, TertiaryTransition TemperatureCarrier ProteinsMyosin Binding Protein C

Identifiers

PMID18379775
OpenAlexW1978646531

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.