Evidence map›Paper›PMID 18376414›Full record

ArticleNature structural & molecular biology2008

Pore-opening mechanism of the nicotinic acetylcholine receptor evinced by proton transfer.

Gisela D Cymes, Claudio Grosman

Open access · greenAbstract read
In one paragraph

Article in Nature structural & molecular biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 51 citations in OpenAlex.

  1. Article
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  6. Identifying the elusive link between amino acid sequence and charge selectivity in pentameric ligand-gated ion channels.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  7. Engineering differential charge selectivity from a single structural template.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
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  11. Review
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  19. Mechanism of function of viral channel proteins and implications for drug development.International review of cell and molecular biology · 2012
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Gisela D CymesDepartment of Molecular and Integrative Physiology, Center for Biophysics and Computational Biology and Neuroscience Program, University of Illinois at Urbana-Champaign, 407 South Goodwin Avenue, 524 Burrill Hall, Urbana, Illinois 61801, USA.
Claudio Grosman
University of Illinois Urbana-Champaign · US

Funding

Mechanisms of Neurotransmitter-Gated Ion ChannelsR01NS042169 · NINDS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI GROSMAN, CLAUDIO F · 2003 to 2022
$6.6M
NINDS NIH HHS R01 NS042169NINDS NIH HHS R01-NS042169
6 · The paper itself

Abstract

The conformational changes underlying cysteine-loop receptor channel gating remain elusive and controversial. We previously developed a single-channel electrophysiological method that allows structural inferences about the transient open-channel conformation to be made from the effect and properties of introduced charges on systematically engineered ionizable amino acids. Here we have applied this methodology to the entire M1 and M3 segments of the muscle nicotinic acetylcholine receptor, two transmembrane alpha-helices that pack against the pore-lining M2 alpha-helix. Together with our previous results on M2, these data suggest that the pore dilation that underlies channel opening involves only a subtle rearrangement of these three transmembrane helices. Such a limited conformational change seems optimal to allow rapid closed-open interconversion rates, and hence a fast postsynaptic response upon neurotransmitter binding. Thus, this receptor-channel seems to have evolved to take full advantage of the steep dependence of ion- and water-conduction rates on pore diameter that is characteristic of model hydrophobic nanopores.

Indexed as

ProtonsAmino Acid SequenceCell LineHumansIon Channel GatingIon TransportKineticsModels, MolecularMolecular Sequence DataProtein BindingReceptors, NicotinicSequence Homology, Amino AcidProtonsReceptors, Nicotinic

Identifiers

PMID18376414
PMCPMC2596065
OpenAlexW2008052027

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.