Evidence map›Paper›PMID 18376407›Full record

ArticleNature medicine2008

CCL3L1-CCR5 genotype influences durability of immune recovery during antiretroviral therapy of HIV-1-infected individuals.

Sunil K Ahuja, Hemant Kulkarni, Gabriel Catano, Brian K Agan, Jose F Camargo, Weijing He, Robert J O'Connell, Vincent C Marconi, Judith Delmar, Joseph Eron and 9 more

Open access · greenAbstract read
In one paragraph

Article in Nature medicine, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 74 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
74citing papers in PubMed, 1 pooled it
6.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

74 citing papers in PubMed, 1 synthesis or guideline pooled it, 119 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Biomolecules · 2019
    Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Common Variation inOpen forum infectious diseases · 2018
    Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Perceptions of genetic testing and genomic medicine among drug users.The International journal on drug policy · 2015
    Article

14 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

19 authors at 9 institutions in 1 country.

Sunil K AhujaVeterans Administration Research Center for AIDS and HIV-1 Infection, South Texas Veterans Health Care System, 7400 Merton Minter, San Antonio, Texas 78229, USA. ahujas@uthscsa.edu
Hemant Kulkarni
Gabriel Catano
Brian K Agan
Jose F Camargo
Weijing He
Robert J O'Connell
Vincent C Marconi
Judith Delmar
Joseph Eron
Robert A Clark
Simon Frost
Jeffrey Martin
Seema S Ahuja
Steven G Deeks
Susan Little
Douglas Richman
Frederick M Hecht
Matthew J Dolan
South Texas Veterans Health Care System · USUniformed Services University of the Health Sciences · USSan Francisco General Hospital · USUniversity of California, San Diego · USWilford Hall Medical Center · USBerry (United States) · USThe University of Texas Health Science Center at San Antonio · USUniversity of North Carolina at Chapel Hill · USVA San Diego Healthcare System · US

Funding

Virology, Immunology, and Microbiology CoreP30AI050410 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DAVID M. MARGOLIS · 2001 to 2026
$76.9M
Transmission ProbabilityP01AI074621 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI RICHMAN, DOUGLAS D · 2008 to 2012
$23.1M
Primary Infection Resource Consortium (PIRC)R24AI106039 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI LITTLE, SUSAN JANET · 2013 to 2021
$23.1M
Host Genetic Determinants of HIV PathogenesisR37AI046326 · NIAID · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI AHUJA, SUNIL K · 2005 to 2014
$7.8M
NIAID NIH HHS P01 AI074621NIAID NIH HHS P30 AI050410NIAID NIH HHS R24 AI106039NIAID NIH HHS R37 AI046326
6 · The paper itself

Abstract

The basis for the extensive variability seen in the reconstitution of CD4(+) T cell counts in HIV-infected individuals receiving highly active antiretroviral therapy (HAART) is not fully known. Here, we show that variations in CCL3L1 gene dose and CCR5 genotype, but not major histocompatibility complex HLA alleles, influence immune reconstitution, especially when HAART is initiated at <350 CD4(+) T cells/mm(3). The CCL3L1-CCR5 genotypes favoring CD4(+) T cell recovery are similar to those that blunted CD4(+) T cell depletion during the time before HAART became available (pre-HAART era), suggesting that a common CCL3L1-CCR5 genetic pathway regulates the balance between pathogenic and reparative processes from early in the disease course. Hence, CCL3L1-CCR5 variations influence HIV pathogenesis even in the presence of HAART and, therefore, may prospectively identify subjects in whom earlier initiation of therapy is more likely to mitigate immunologic failure despite viral suppression by HAART. Furthermore, as reconstitution of CD4(+) cells during HAART is more sensitive to CCL3L1 dose than to CCR5 genotypes, CCL3L1 analogs might be efficacious in supporting immunological reconstitution.

Indexed as

AllelesAntiretroviral Therapy, Highly ActiveCD4 Lymphocyte CountChemokines, CCCohort StudiesGene DosageGenetic VariationGenotypeHIV InfectionsHLA AntigensHumansProspective StudiesReceptors, CCR5CCL3L1 protein, humanChemokines, CCHLA AntigensReceptors, CCR5

Identifiers

PMID18376407
PMCPMC2630879
OpenAlexW1987133643

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.