Evidence map›Paper›PMID 18375807›Full record

ArticleMicrobiology (Reading, England)2008

Identification of Haemophilus ducreyi genes expressed during human infection.

Margaret E Bauer, Kate R Fortney, Alistair Harrison, Diane M Janowicz, Robert S Munson, Stanley M Spinola

Open access · greenAbstract readComparative Study
In one paragraph

Article in Microbiology (Reading, England), 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 28 citations in OpenAlex.

  1. Molecular pathogenesis ofMicrobiology and molecular biology reviews : MMBR · 2025
    Review
  2. Article
  3. Infections caused byClinical microbiology reviews · 2024
    Review
  4. Article
  5. Article
  6. Article
  7. Transcriptomics in Human Challenge Models.Frontiers in immunology · 2017
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Host-pathogen interplay of Haemophilus ducreyi.Current opinion in infectious diseases · 2010
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Margaret E BauerDepartment of Microbiology and Immunology, Indiana University School of Medicine, 635 Barnhill Drive, Room MS420, Indianapolis, IN 46202, USA.
Kate R FortneyDepartment of Medicine, Indiana University School of Medicine, 545 Barnhill Drive, Room EH 435, Indianapolis, IN 46202, USA.
Alistair HarrisonThe Center for Microbial Pathogenesis in The Research Institute at Nationwide Children's Hospital, 700 Children's Drive, Columbus, OH 43205-2696, USA.
Diane M JanowiczDepartment of Medicine, Indiana University School of Medicine, 545 Barnhill Drive, Room EH 435, Indianapolis, IN 46202, USA.
Robert S MunsonThe Center for Microbial Interface Biology and Department of Pediatrics, The Ohio State University, 700 Children's Drive, Columbus, OH 43205-2696, USA.
Stanley M SpinolaDepartment of Microbiology and Immunology, Indiana University School of Medicine, 635 Barnhill Drive, Room MS420, Indianapolis, IN 46202, USA.
Indiana University School of MedicineNationwide Children's Hospital · USIndiana University – Purdue University Indianapolis · US

Funding

ZOSUQUIDAR TRIHYDROCHLORIDE DURING CONVENTIONAL INDUCTION AND POST-REMISSIONM01RR000750 · NCRR · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI RODRIGUEZ, HENRY · 1985 to 2008
$25.5M
VIRAL DETERMINANTS OF HSV DISEASE IN MICEU19AI031494 · NIAID · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI KATZ, BARRY P. · 1995 to 2009
$13.6M
PATHOGENESIS OF HAEMOPHILUS DUCREYI INFECTIONSR01AI027863 · NIAID · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI SPINOLA, STANLEY M. · 1995 to 2013
$3.8M
Training in STIs and infections of global health significanceT32AI007637 · NIAID · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI WOOLS-KALOUSTIAN, KARA KAY · 2001 to 2020
$3.4M
Characterization of Lipoproteins in Haemophilus ducreyi PathogenesisK08AI074657 · NIAID · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI JANOWICZ, DIANE M · 2007 to 2011
$671k
PATHOGENESIS OF HAEMOPHILUS DUCREYI INFECTIONSR29AI027863 · NIAID · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI SPINOLA, STANLEY M · 1990 to 1994
–
VARIABILITY IN HERPES SIMPLEX VIRUS GLYCOPROTEINS AND INFECTIVITYU01AI031494 · NIAID · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI SEIFERT, H. STEVEN · 1991 to 1994
–
NCRR NIH HHS M01 RR000750NCRR NIH HHS M01 RR 00750NIAID NIH HHS AI27863NIAID NIH HHS AI31494NIAID NIH HHS K08 AI 074657NIAID NIH HHS K08 AI074657NIAID NIH HHS R01 AI027863NIAID NIH HHS T32 AI 007637NIAID NIH HHS T32 AI007637NIAID NIH HHS U19 AI031494
6 · The paper itself

Abstract

To identify Haemophilus ducreyi transcripts that are expressed during human infection, we used selective capture of transcribed sequences (SCOTS) with RNA isolated from pustules obtained from three volunteers infected with H. ducreyi, and with RNA isolated from broth-grown bacteria used to infect volunteers. With SCOTS, competitive hybridization of tissue-derived and broth-derived sequences identifies genes that may be preferentially expressed in vivo. Among the three tissue specimens, we identified 531 genes expressed in vivo. Southern blot analysis of 60 genes from each tissue showed that 87 % of the identified genes hybridized better with cDNA derived from tissue specimens than with cDNA derived from broth-grown bacteria. RT-PCR on nine additional pustules confirmed in vivo expression of 10 of 11 selected genes in other volunteers. Of the 531 genes, 139 were identified in at least two volunteers. These 139 genes fell into several functional categories, including biosynthesis and metabolism, regulation, and cellular processes, such as transcription, translation, cell division, DNA replication and repair, and transport. Detection of genes involved in anaerobic and aerobic respiration indicated that H. ducreyi likely encounters both microenvironments within the pustule. Other genes detected suggest an increase in DNA damage and stress in vivo. Genes involved in virulence in other bacterial pathogens and 32 genes encoding hypothetical proteins were identified, and may represent novel virulence factors. We identified three genes, lspA1, lspA2 and tadA, known to be required for virulence in humans. This is the first study to broadly define transcripts expressed by H. ducreyi in humans.

Indexed as

Genes, BacterialFemaleGene Expression ProfilingHaemophilus ducreyiHuman ExperimentationHumansMaleSkin Diseases, Bacterial

Identifiers

PMID18375807
PMCPMC2852322
OpenAlexW2125040399

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.