Evidence map›Paper›PMID 18375619›Full record

ArticleEukaryotic cell2008

Saccharomyces cerevisiae phospholipase C regulates transcription of Msn2p-dependent stress-responsive genes.

Agnieszka Demczuk, Nilanjan Guha, Peter H Nguyen, Parima Desai, Jennifer Chang, Katarzyna Guzinska, Janet Rollins, Chandra C Ghosh, Leslie Goodwin, Ales Vancura

Open access · diamondAbstract read
In one paragraph

Article in Eukaryotic cell, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
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  9. Acetyl-CoA carboxylase regulates global histone acetylation.The Journal of biological chemistry · 2012
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Agnieszka DemczukDepartment of Biological Sciences, St. John's University, 8000 Utopia Parkway, Queens, NY 11439, USA.
Nilanjan Guha
Peter H Nguyen
Parima Desai
Jennifer Chang
Katarzyna Guzinska
Janet Rollins
Chandra C Ghosh
Leslie Goodwin
Ales Vancura
St. John's University · US

Funding

Role of Inositol Polyphosphates in Kinetochore Function and TranscriptionR15GM076075 · NIGMS · ST. JOHN'S UNIVERSITY · PI VANCURA, ALES · 2006 to 2006
$248k
NIGMS NIH HHS GM076075NIGMS NIH HHS R15 GM076075
6 · The paper itself

Abstract

Phosphatidylinositol phosphates are involved in signal transduction, cytoskeletal organization, and membrane trafficking. Inositol polyphosphates, produced from phosphatidylinositol phosphates by the phospholipase C-dependent pathway, regulate chromatin remodeling. We used genome-wide expression analysis to further investigate the roles of Plc1p (phosphoinositide-specific phospholipase C in Saccharomyces cerevisiae) and inositol polyphosphates in transcriptional regulation. Plc1p contributes to the regulation of approximately 2% of yeast genes in cells grown in rich medium. Most of these genes are induced by nutrient limitation and other environmental stresses and are derepressed in plc1 Delta cells. Surprisingly, genes regulated by Plc1p do not correlate with gene sets regulated by Swi/Snf or RSC chromatin remodeling complexes but show correlation with genes controlled by Msn2p. Our results suggest that the increased expression of stress-responsive genes in plc1 Delta cells is mediated by decreased cyclic AMP synthesis and protein kinase A (PKA)-mediated phosphorylation of Msn2p and increased binding of Msn2p to stress-responsive promoters. Accordingly, plc1 Delta cells display other phenotypes characteristic of cells with decreased PKA activity. Our results are consistent with a model in which Plc1p acts together with the membrane receptor Gpr1p and associated G(alpha) protein Gpa2p in a pathway separate from Ras1p/Ras2p and converging on PKA.

Indexed as

Gene Expression Regulation, FungalTranscription, GeneticCyclic AMP-Dependent Protein KinasesDNA-Binding ProteinsGene DeletionMultiprotein ComplexesPhosphatidylinositol PhosphatesPromoter Regions, GeneticSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscriptional ActivationTranscription FactorsTranscription Initiation SiteType C PhospholipasesCyclic AMP-Dependent Protein KinasesDNA-Binding ProteinsMSN2 protein, S cerevisiaeMultiprotein ComplexesPhosphatidylinositol PhosphatesPlc1 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsTranscription FactorsType C Phospholipases

Identifiers

PMID18375619
PMCPMC2446660
OpenAlexW2114221400

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.