Evidence map›Paper›PMID 18375554›Full record

ArticleJournal of bacteriology2008

Complete genome sequence of uropathogenic Proteus mirabilis, a master of both adherence and motility.

Melanie M Pearson, Mohammed Sebaihia, Carol Churcher, Michael A Quail, Aswin S Seshasayee, Nicholas M Luscombe, Zahra Abdellah, Claire Arrosmith, Becky Atkin, Tracey Chillingworth and 12 more

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 152 papers.

0numbers the graph read from it
0cells of the map it votes in
152citing papers in PubMed
6.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

152 citing papers in PubMed, 258 citations in OpenAlex.

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92 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 4 institutions in 2 countries.

Melanie M PearsonDepartment of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI 48109-0620, USA.
Mohammed Sebaihia
Carol Churcher
Michael A Quail
Aswin S Seshasayee
Nicholas M Luscombe
Zahra Abdellah
Claire Arrosmith
Becky Atkin
Tracey Chillingworth
Heidi Hauser
Kay Jagels
Sharon Moule
Karen Mungall
Halina Norbertczak
Ester Rabbinowitsch
Danielle Walker
Sally Whithead
Nicholas R Thomson
Philip N Rather
Julian Parkhill
Harry L T Mobley
Wellcome Sanger Institute · GBUniversity of Michigan–Ann Arbor · USWellcome Trust · GBEmory University · US

Funding

Reciprocal Control of Motility and Adherence in UTIR01AI059722 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI PEARSON, MELANIE M. · 2005 to 2024
$7.4M
Molecular Mechanisms of Microbial Pathogenesis Training ProgramT32AI007528 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI CARRUTHERS, VERNON BRUCE · 1998 to 2024
$6.8M
Genomic Approach to Vaccine Design for Proteus mirabilisF32AI068324 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI PEARSON, MELANIE M. · 2007 to 2008
$101k
NIAID NIH HHS AI059722NIAID NIH HHS F32 AI068324NIAID NIH HHS R01 AI059722NIAID NIH HHS T32 AI007528NIAID NIH HHS T32 AI7528Wellcome Trust
6 · The paper itself

Abstract

The gram-negative enteric bacterium Proteus mirabilis is a frequent cause of urinary tract infections in individuals with long-term indwelling catheters or with complicated urinary tracts (e.g., due to spinal cord injury or anatomic abnormality). P. mirabilis bacteriuria may lead to acute pyelonephritis, fever, and bacteremia. Most notoriously, this pathogen uses urease to catalyze the formation of kidney and bladder stones or to encrust or obstruct indwelling urinary catheters. Here we report the complete genome sequence of P. mirabilis HI4320, a representative strain cultured in our laboratory from the urine of a nursing home patient with a long-term (> or =30 days) indwelling urinary catheter. The genome is 4.063 Mb long and has a G+C content of 38.88%. There is a single plasmid consisting of 36,289 nucleotides. Annotation of the genome identified 3,685 coding sequences and seven rRNA loci. Analysis of the sequence confirmed the presence of previously identified virulence determinants, as well as a contiguous 54-kb flagellar regulon and 17 types of fimbriae. Genes encoding a potential type III secretion system were identified on a low-G+C-content genomic island containing 24 intact genes that appear to encode all components necessary to assemble a type III secretion system needle complex. In addition, the P. mirabilis HI4320 genome possesses four tandem copies of the zapE metalloprotease gene, genes encoding six putative autotransporters, an extension of the atf fimbrial operon to six genes, including an mrpJ homolog, and genes encoding at least five iron uptake mechanisms, two potential type IV secretion systems, and 16 two-component regulators.

Indexed as

Genome, BacterialAnimalsBacterial AdhesionBacterial ProteinsChemotaxisChromosomes, BacterialFemaleFimbriae, BacterialGene Expression Regulation, BacterialHumansMiceMice, Inbred CBAMolecular Sequence DataMovementPlasmidsProteus InfectionsBacterial ProteinsVirulence Factors

Identifiers

PMID18375554
PMCPMC2395036
OpenAlexW2139524147

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.