Evidence map›Paper›PMID 18374305›Full record

ArticleBiological psychiatry2008

Novel submicroscopic chromosomal abnormalities detected in autism spectrum disorder.

Susan L Christian, Camille W Brune, Jyotsna Sudi, Ravinesh A Kumar, Shaung Liu, Samer Karamohamed, Judith A Badner, Seiichi Matsui, Jeffrey Conroy, Devin McQuaid and 7 more

Open access · greenAbstract read
In one paragraph

Article in Biological psychiatry, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 145 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
145citing papers in PubMed, 2 pooled it
27.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

145 citing papers in PubMed, 2 syntheses or guidelines pooled it, 299 citations in OpenAlex.

  1. Glutamatergic candidate genes in autism spectrum disorder: an overview.Journal of neural transmission (Vienna, Austria : 1996) · 2014
    Pooled it
  2. Array-based technology and recommendations for utilization in medical genetics practice for detection of chromosomal abnormalities.Genetics in medicine : official journal of the American College of Medical Genetics · 2010
    Guideline
  3. Review
  4. Article
  5. Epigenetic Insights into Autism Spectrum Disorder: DNA Methylation Levels ofClinical psychopharmacology and neuroscience : the official scientific journal of the Korean College of Neuropsychopharmacology · 2024
    Article
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  11. CAPS2 Deficiency Impairs the Release of the Social Peptide Oxytocin, as Well as Oxytocin-Associated Social Behavior.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2021
    Article
  12. Review
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  15. The α5-Containing GABAJournal of molecular neuroscience : MN · 2019
    Review
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  19. Chemogenetic Activation of Prefrontal Cortex Rescues Synaptic and Behavioral Deficits in a Mouse Model of 16p11.2 Deletion Syndrome.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2018
    Article
  20. Article

85 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 6 institutions in 1 country.

Susan L ChristianDepartment of Human Genetics, University of Chicago, Chicago, IL 60637, USA. schrist@bsd.uchicago.edu
Camille W Brune
Jyotsna Sudi
Ravinesh A Kumar
Shaung Liu
Samer Karamohamed
Judith A Badner
Seiichi Matsui
Jeffrey Conroy
Devin McQuaid
James Gergel
Eli Hatchwell
T Conrad Gilliam
Elliot S Gershon
Norma J Nowak
William B Dobyns
Edwin H Cook
University of Chicago · USCancer Genetics (United States) · USUniversity of Illinois Chicago · USOak Ridge National Laboratory · USRoswell Park Comprehensive Cancer Center · USStony Brook University · US

Funding

Two-Spirit Films in Indigenous Cancer HealthP30CA016056 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI Christine B. Ambrosone · 1985 to 2026
$116.6M
Genomewide Search--Autism Susceptibility Loci-supplementR01MH064547 · NIMH · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI GESCHWIND, DANIEL H · 2002 to 2006
$9.6M
Genomic Imbalances in AutismR01NS051812 · NINDS · UNIVERSITY OF CHICAGO · PI CHRISTIAN, SUSAN LYNN · 2005 to 2008
$2.1M
NCI NIH HHS P30 CA016056NIMH NIH HHS R01 MH064547NINDS NIH HHS R01 NS051812NINDS NIH HHS R01 NS51812Wellcome Trust
6 · The paper itself

Abstract

backgroundOne genetic mechanism known to be associated with autism spectrum disorders (ASD) is chromosomal abnormalities. The identification of copy number variants (CNV), i.e., microdeletions and microduplications that are undetectable at the level of traditional cytogenetic analysis, allows the potential association of submicroscopic chromosomal imbalances and human disease.

methodsWe performed array comparative genomic hybridization (aCGH) utilizing a 19K whole genome tiling path bacterial artificial chromosome (BAC) microarray on 397 unrelated subjects with autism spectrum disorder. Common CNV were excluded using a control group comprised of 372 individuals from the National Institute of Mental Health (NIMH) Genetics Initiative Control samples. Confirmation studies were performed on all remaining CNV using fluorescence in situ hybridization (FISH), microsatellite analysis, and/or quantitative polymerase chain reaction (PCR) analysis.

resultsA total of 51 CNV were confirmed in 46 ASD subjects. Three maternal interstitial duplications of 15q11-q13 known to be associated with ASD were identified. The other 48 CNV ranged in size from 189 kilobase (kb) to 5.5 megabase (Mb) and contained from 0 to approximately 40 National Center for Biotechnology Information (NCBI) Reference Sequence (RefSeq) genes. Seven CNV were de novo and 44 were inherited.

conclusionsFifty-one autism-specific CNV were identified in 46 of 397 ASD patients using a 19K BAC microarray for an overall rate of 11.6%. These microdeletions and microduplications cause gene dosage imbalance in 272 genes, many of which could be considered as candidate genes for autism.

Indexed as

Chromosome AberrationsAllelesAutistic DisorderBlack PeopleChildChromosome DeletionChromosomes, Artificial, BacterialChromosomes, Human, Pair 15DNA Mutational AnalysisFemaleGene DosageGene DuplicationGenetic Predisposition to DiseaseGenetic VariationGenotypeHumans

Identifiers

PMID18374305
PMCPMC2440346
OpenAlexW2087276835

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.