Evidence map›Paper›PMID 18372903›Full record

SynthesisNature genetics2008

Meta-analysis of genome-wide association data and large-scale replication identifies additional susceptibility loci for type 2 diabetes.

Eleftheria Zeggini, Laura J Scott, Richa Saxena, Benjamin F Voight, Jonathan L Marchini, Tianle Hu, Paul I W de Bakker, Gonçalo R Abecasis, Peter Almgren, Gitte Andersen and 89 more

Abstract readMeta-Analysis
In one paragraph

Synthesis in Nature genetics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1,039 papers, 14 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
1,039citing papers in PubMed, 14 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1,039 citing papers in PubMed, 14 syntheses or guidelines pooled it.

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  9. Systematic Review of Polygenic Risk Scores for Type 1 and Type 2 Diabetes.International journal of molecular sciences · 2020
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979 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

99 authors.

Eleftheria ZegginiWellcome Trust Centre for Human Genetics, University of Oxford, Oxford, UK.
Laura J Scott
Richa Saxena
Benjamin F Voight
Jonathan L Marchini
Tianle Hu
Paul I W de Bakker
Gonçalo R Abecasis
Peter Almgren
Gitte Andersen
Kristin Ardlie
Kristina Bengtsson Boström
Richard N Bergman
Lori L Bonnycastle
Knut Borch-Johnsen
Noël P Burtt
Hong Chen
Peter S Chines
Mark J Daly
Parimal Deodhar
Chia-Jen Ding
Alex S F Doney
William L Duren
Katherine S Elliott
Michael R Erdos
Timothy M Frayling
Rachel M Freathy
Lauren Gianniny
Harald Grallert
Niels Grarup
Christopher J Groves
Candace Guiducci
Torben Hansen
Christian Herder
Graham A Hitman
Thomas E Hughes
Bo Isomaa
Anne U Jackson
Torben Jørgensen
Augustine Kong
Kari Kubalanza
Finny G Kuruvilla
Johanna Kuusisto
Claudia Langenberg
Hana Lango
Torsten Lauritzen
Yun Li
Cecilia M Lindgren
Valeriya Lyssenko
Amanda F Marvelle
Christa Meisinger
Kristian Midthjell
Karen L Mohlke
Mario A Morken
Andrew D Morris
Narisu Narisu
Peter Nilsson
Katharine R Owen
Colin N A Palmer
Felicity Payne
John R B Perry
Elin Pettersen
Carl Platou
Inga Prokopenko
Lu Qi
Li Qin
Nigel W Rayner
Matthew Rees
Jeffrey J Roix
Anelli Sandbaek
Beverley Shields
Marketa Sjögren
Valgerdur Steinthorsdottir
Heather M Stringham
Amy J Swift
Gudmar Thorleifsson
Unnur Thorsteinsdottir
Nicholas J Timpson
Tiinamaija Tuomi
Jaakko Tuomilehto
Mark Walker
Richard M Watanabe
Michael N Weedon
Cristen J Willer
Wellcome Trust Case Control Consortium
Thomas Illig
Kristian Hveem
Frank B Hu
Markku Laakso
Kari Stefansson
Oluf Pedersen
Nicholas J Wareham
Inês Barroso
Andrew T Hattersley
Francis S Collins
Leif Groop
Mark I McCarthy
Michael Boehnke
David Altshuler

Funding

Statistical MethodsP01CA087969 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI ROSNER, BERNARD A · 2000 to 2019
$77.8M
Genetic analysis of type II diabetes in Finnish populationZIAHG000024 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI ERDOS, MICHAEL · 2009 to 2025
$38.2M
ROLE OF DIETARY CONSTITUENTS ON GENE EXPRESSION IN INTESTINAL EPITHELIUMP30DK040561 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI CHRISTOPHER P DUGGAN · 1994 to 2026
$31.6M
Nation Center- Integrative Biomedical Informatics(RMI)U54DA021519 · NIDA · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ATHEY, BRIAN DAVID · 2005 to 2010
$21.3M
Identifying Genes for Type 2 Diabetes: FUSIONU01DK062370 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI BOEHNKE, MICHAEL L, SCOTT, LAURA J. · 2009 to 2021
$11.6M
Targeted Genetic Analysis of T2D and Quantitative TraitsR01DK072193 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI KAREN L. MOHLKE · 2005 to 2026
$11.3M
QUANTITATION OF FACTORS REGULATING GLUCOSE TOLERANCER01DK029867 · NIDDK · UNIVERSITY OF SOUTHERN CALIFORNIA · PI MARILYN ADER · 1986 to 2026
$11.0M
BIOCHEMICAL AND GENETIC MARKERS OF TYPE 2 DIABETES RISKR01DK058845 · NIDDK · BRIGHAM AND WOMEN'S HOSPITAL · PI HU, FRANK B · 2001 to 2013
$7.8M
Identifying Genes for Type 2 Diabetes:FUSIONR01DK062370 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI BOEHNKE, MICHAEL L, SCOTT, LAURA J. · 2003 to 2025
$6.7M
GENETIC ANALYSIS OF TYPE II DIABETES IN FINNISH POPULATIONZ01HG000024 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI COLLINS, FRANCIS S. · 1995 to 2008
$6.2M
Computational and Statistical Models for Human PedigreesR01HG002651 · NHGRI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ABECASIS, GONCALO · 2003 to 2008
$2.9M
GENOTYPING FOR LOCATING HUMAN DISEASE GENESN01HG065403 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI VALLE, DAVID L · 1996 to 2000
$1.7M
Department of Health DHCS/07/07/008Intramural NIH HHS Z01 HG000024Medical Research Council G0000649Medical Research Council G0600705Medical Research Council G0601261Medical Research Council MC_U106179471NCI NIH HHS CA87969NCI NIH HHS P01 CA087969NHGRI NIH HHS HG002651NHGRI NIH HHS N01 HG065403NHGRI NIH HHS R01 HG002651NHGRI NIH HHS U01 HG004171NHGRI NIH HHS U01 HG004399NHLBI NIH HHS HL084729NHLBI NIH HHS U01 HL084729NIDA NIH HHS U54 DA021519NIDDK NIH HHS DK062370NIDDK NIH HHS DK072193NIDDK NIH HHS DK58845NIDDK NIH HHS P30 DK040561NIDDK NIH HHS R01 DK029867NIDDK NIH HHS R01 DK058845NIDDK NIH HHS R01 DK062370NIDDK NIH HHS R01 DK072193NIDDK NIH HHS R56 DK062370NIDDK NIH HHS U01 DK062370Wellcome Trust 072960Wellcome Trust 076113Wellcome Trust 077016Wellcome Trust 079557Wellcome Trust 090532Wellcome Trust GR072960
6 · The paper itself

Abstract

Genome-wide association (GWA) studies have identified multiple loci at which common variants modestly but reproducibly influence risk of type 2 diabetes (T2D). Established associations to common and rare variants explain only a small proportion of the heritability of T2D. As previously published analyses had limited power to identify variants with modest effects, we carried out meta-analysis of three T2D GWA scans comprising 10,128 individuals of European descent and approximately 2.2 million SNPs (directly genotyped and imputed), followed by replication testing in an independent sample with an effective sample size of up to 53,975. We detected at least six previously unknown loci with robust evidence for association, including the JAZF1 (P = 5.0 x 10(-14)), CDC123-CAMK1D (P = 1.2 x 10(-10)), TSPAN8-LGR5 (P = 1.1 x 10(-9)), THADA (P = 1.1 x 10(-9)), ADAMTS9 (P = 1.2 x 10(-8)) and NOTCH2 (P = 4.1 x 10(-8)) gene regions. Our results illustrate the value of large discovery and follow-up samples for gaining further insights into the inherited basis of T2D.

Indexed as

Genetic Predisposition to DiseaseGenome, HumanDiabetes Mellitus, Type 2HumansPolymorphism, Single Nucleotide

Identifiers

PMID18372903
PMCPMC2672416

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.