Evidence map›Paper›PMID 18371933›Full record

ArticleAmerican journal of human genetics2008

Breakpoint mapping and array CGH in translocations: comparison of a phenotypically normal and an abnormal cohort.

Julia Baptista, Catherine Mercer, Elena Prigmore, Susan M Gribble, Nigel P Carter, Viv Maloney, N Simon Thomas, Patricia A Jacobs, John A Crolla

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in American journal of human genetics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed, 1 pooled it
20.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 1 synthesis or guideline pooled it, 237 citations in OpenAlex.

  1. Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 1 country.

Julia BaptistaWessex Regional Genetics Laboratory, Salisbury District Hospital, Salisbury, Wiltshire, UK.
Catherine Mercer
Elena Prigmore
Susan M Gribble
Nigel P Carter
Viv Maloney
N Simon Thomas
Patricia A Jacobs
John A Crolla
University of Southampton · GBWellcome Sanger Institute · GBPrincess Anne Hospital · GBSalisbury District Hospital · GBWessex Regional Genetics Laboratory · GB

Funding

Wellcome Trust
6 · The paper itself

Abstract

We report the analyses of breakpoints in 31 phenotypically normal and 14 abnormal carriers of balanced translocations. Our study assesses the differences between balanced translocations in normal carriers and those in abnormal carriers, focusing on the presence of genomic imbalances at the breakpoints or elsewhere in the genome, presence of cryptic chromosome rearrangements, and gene disruption. Our hypothesis is that all four features will be associated with phenotypic abnormalities and absent or much less frequent in a normal population. In the normal cohort, we identified neither genomic imbalances at the breakpoints or elsewhere in the genome nor cryptic chromosome rearrangements. In contrast, we identified candidate disease-causing imbalances in 4/14 abnormal patients. These were three breakpoint associated deletions and three deletions unrelated to the breakpoints. All six de novo deletions originated on the paternally inherited chromosome. Additional complexity was also present in one of these cases. Gene disruption by the breakpoints was present in 16/31 phenotypically normal individuals and in 5/14 phenotypically abnormal patients. Our results show that translocations in phenotypically abnormal patients are molecularly distinct from those in normal individuals: the former are more likely to be associated with genomic imbalances at the breakpoints or elsewhere and with chromosomal complexity, whereas the frequency of gene disruption is similar in both normal and abnormal translocation carriers.

Indexed as

Chromosome BreakageChromosome DeletionTranslocation, GeneticAdolescentAdultChildChromosome DisordersChromosome MappingCohort StudiesFemaleHumansIn Situ Hybridization, FluorescenceKaryotypingMaleMiddle AgedOligonucleotide Array Sequence Analysis

Identifiers

PMID18371933
PMCPMC2427237
OpenAlexW1991642156

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.