Evidence map›Paper›PMID 18371209›Full record

ArticleRetrovirology2008

Evolution of DC-SIGN use revealed by fitness studies of R5 HIV-1 variants emerging during AIDS progression.

Marie Borggren, Johanna Repits, Carlotta Kuylenstierna, Jasminka Sterjovski, Melissa J Churchill, Damian F J Purcell, Anders Karlsson, Jan Albert, Paul R Gorry, Marianne Jansson

Open access · goldAbstract readComparative Study
In one paragraph

Article in Retrovirology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 27 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
  4. Review
  5. Mortality trends in the US Perinatal AIDS Collaborative Transmission Study (1986-2004).Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2011
    Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. How HIV changes its tropism: evolution and adaptation?Current opinion in HIV and AIDS · 2009
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 2 countries.

Marie BorggrenDept Laboratory Medicine, Lund University, Lund, Sweden. marianne.jansson@smi.ki.se
Johanna Repits
Carlotta Kuylenstierna
Jasminka Sterjovski
Melissa J Churchill
Damian F J Purcell
Anders Karlsson
Jan Albert
Paul R Gorry
Marianne Jansson
Burnet Institute · AULund University · SEDanderyds sjukhus · SEKarolinska Institutet · SESwedish Institute · SEThe University of Melbourne · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAt early stages of infection CCR5 is the predominant HIV-1 coreceptor, but in approximately 50% of those infected CXCR4-using viruses emerge with disease progression. This coreceptor switch is correlated with an accelerated progression. However, those that maintain virus exclusively restricted to CCR5 (R5) also develop AIDS. We have previously reported that R5 variants in these "non-switch virus" patients evolve during disease progression towards a more replicative phenotype exhibiting altered CCR5 coreceptor interactions. DC-SIGN is a C-type lectin expressed by dendritic cells that HIV-1 may bind and utilize for enhanced infection of T cells in trans. To further explore the evolution of the R5 phenotype we analyzed sequential R5 isolates obtained before and after AIDS onset, i.e. at the chronic stage and during end-stage disease, with regard to efficiency of DC-SIGN use in trans-infections.

resultsResults from binding and trans-infection assays showed that R5 viruses emerging during end-stage AIDS disease displayed reduced ability to use DC-SIGN. To better understand viral determinants underlying altered DC-SIGN usage by R5 viruses, we cloned and sequenced the HIV-1 env gene. We found that end-stage R5 viruses lacked potential N-linked glycosylation sites (PNGS) in the gp120 V2 and V4 regions, which were present in the majority of the chronic stage R5 variants. One of these sites, amino acid position 160 (aa160) in the V2 region, also correlated with efficient use of DC-SIGN for binding and trans-infections. In fitness assays, where head-to-head competitions between chronic stage and AIDS R5 viruses were setup in parallel direct and DC-SIGN-mediated infections, results were further supported. Competitions revealed that R5 viruses obtained before AIDS onset, containing the V2 PNGS at aa160, were selected for in the trans-infection. Whereas, in agreement with our previous studies, the opposite was seen in direct target cell infections where end-stage viruses out-competed the chronic stage viruses.

conclusionResults of our study suggest R5 virus variants with diverse fitness for direct and DC-SIGN-mediated trans-infections evolve within infected individuals at end-stage disease. In addition, our results point to the importance of a glycosylation site within the gp120 V2 region for efficient DC-SIGN use of HIV-1 R5 viruses.

Indexed as

Acquired Immunodeficiency SyndromeAmino Acid SequenceBinding SitesCell Adhesion MoleculesChronic DiseaseDC-Specific ICAM-3 Grabbing NonintegrinDisease ProgressionGenetic VariationGlycosylationHIV-1HIV Envelope Protein gp120HumansLectins, C-TypeMaleMolecular Sequence DataProtein BindingCell Adhesion MoleculesDC-Specific ICAM-3 Grabbing NonintegrinHIV Envelope Protein gp120Lectins, C-TypeReceptors, CCR5Receptors, Cell SurfaceReceptors, HIV

Identifiers

PMID18371209
PMCPMC2330154
OpenAlexW2148317653

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.