Evidence map›Paper›PMID 18369585›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2008

Fine mapping of a recessive genic male sterility gene (Bnms3) in rapeseed (Brassica napus) with AFLP- and Arabidopsis-derived PCR markers.

Junping He, Liping Ke, Dengfeng Hong, Yanzhou Xie, Guichun Wang, Pingwu Liu, Guangsheng Yang

Abstract read
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In one paragraph

Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 1 pooled it
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 1 synthesis or guideline pooled it, 53 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Identification of candidate genes underlying genic male-sterile msc-1 locus via genome resequencing in Capsicum annuum L.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2018
    Article
  8. Article
  9. Fine mapping of the Brassica napus Bnsdt1 gene associated with determinate growth habit.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2018
    Article
  10. Fine mapping of the genic male-sterile msTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2018
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Fine mapping and candidate gene analysis of the nuclear restorer gene Rfp for pol CMS in rapeseed (Brassica napus L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2012
    Article
  16. Map-based cloning of a recessive genic male sterility locus in Brassica napus L. and development of its functional marker.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2012
    Article
  17. Article
  18. Review
  19. Molecular mapping of Arabidopsis thaliana lipid-related orthologous genes in Brassica napus.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2012
    Article
  20. Fine mapping of a male sterility gene MS-cd1 in Brassica oleracea.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2011
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Junping HeNational Key Laboratory of Crop Genetic Improvement, National Center of Rapeseed Improvement (Wuhan Branch), Huazhong Agricultural University, Wuhan 430070, China.
Liping Ke
Dengfeng Hong
Yanzhou Xie
Guichun Wang
Pingwu Liu
Guangsheng Yang
Huazhong Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

9012AB, a recessive genic male sterility (RGMS) line developed from spontaneous mutation in Brassica napus (Chen et al. in Acta Agron Sin 24:431-438, 1998), has been playing an increasing role in hybrid cultivar development in China. The male sterility of 9012AB is controlled by two recessive genes (designated Bnms3 and Bnms4) interacting with one recessive epistatic suppressor gene (esp). Previous study has identified seven AFLP markers, six of which were co-segregated with the Bnms3 gene in a small population (Ke et al. in Plant Breed 124:367-370, 2005). By cloning these AFLP markers and their flanking sequences, five of the six co-segregated markers were successfully converted into sequence characterized amplified region (SCAR) markers. For fine mapping of the Bnms3 gene, these SCAR markers were analyzed in a NIL population of 4,136 individuals. The Bnms3 gene was then genetically mapped to a region of 0.56 cM, with 0.15 cM from marker SEP8 and 0.41 from marker SEP4, respectively. BLAST analysis with these SCAR marker sequences identified a collinear genomic region in Arabidopsis chromosome 5, from which two specific PCR markers further narrowed the Bnms3 locus from an interval of 0.56 to 0.14 cM. These results provide additional information for map-based cloning of the Bnms3 gene and will be helpful for marker-assisted selection (MAS) of elite RGMS lines and maintainers.

Indexed as

Chromosome MappingGenes, PlantGenes, RecessiveAmplified Fragment Length Polymorphism AnalysisArabidopsisBrassica napusCloning, MolecularDNA, PlantDNA PrimersGenetic LinkageGenetic MarkersPlant InfertilityPolymerase Chain ReactionSequence Analysis, DNASyntenyDNA, PlantDNA PrimersGenetic Markers

Identifiers

PMID18369585
OpenAlexW2062520198

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.