Evidence map›Paper›PMID 18369185›Full record

ArticleRNA (New York, N.Y.)2008

TbRGG1, an essential protein involved in kinetoplastid RNA metabolism that is associated with a novel multiprotein complex.

Hassan Hashimi, Alena Zíková, Aswini K Panigrahi, Kenneth D Stuart, Julius Lukes

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers.

0numbers the graph read from it
0cells of the map it votes in
66citing papers in PubMed
6.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

66 citing papers in PubMed, 87 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. KRGG1 function in RNA editing inRNA (New York, N.Y.) · 2023
    Article
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  7. Article
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  9. Review
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  13. Review
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  18. TheThe Journal of biological chemistry · 2017
    Article
  19. Article
  20. Article

6 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 3 countries.

Hassan HashimiBiology Centre, Institute of Parasitology, Czech Academy of Sciences, eské Budjovice (Budweis), Czech Republ.
Alena Zíková
Aswini K Panigrahi
Kenneth D Stuart
Julius Lukes
Center for Infectious Disease Research · USCzech Academy of Sciences · CZ

Funding

MITOCHONDRIAL DNA OF NORMAL AND MUTANT TRYPANOSOMESR01AI014102 · NIAID · SEATTLE CHILDREN'S HOSPITAL · PI KENNETH D STUART · 1985 to 2026
$20.9M
T. brucei Mitochondrial ProteomeR01AI065935 · NIAID · SEATTLE BIOMEDICAL RESEARCH INSTITUTE · PI STUART, KENNETH D · 2005 to 2009
$3.9M
RNA Editing ComplexR01GM042188 · NIGMS · SEATTLE BIOMEDICAL RESEARCH INSTITUTE · PI STUART, KENNETH D · 1989 to 2006
$3.4M
MITOCHONDRIAL DNA OF NORMAL AND MUTANT TRYPANOSOMESR37AI014102 · NIAID · SEATTLE BIOMEDICAL RESEARCH INSTITUTE · PI STUART, KENNETH D · 1992 to 2001
$971k
Functional analysis of accessory factors in RNA editingR03TW006445 · FIC · SEATTLE BIOMEDICAL RESEARCH INSTITUTE · PI STUART, KENNETH D · 2004 to 2006
$118k
FIC NIH HHS 5R03TW6445FIC NIH HHS R03 TW006445NIAID NIH HHS AI14102NIAID NIH HHS R01 AI014102NIAID NIH HHS R01 AI065935NIAID NIH HHS R37 AI014102NIGMS NIH HHS R01 GM042188
6 · The paper itself

Abstract

The uridine insertion/deletion RNA editing of kinetoplastid mitochondrial transcripts is performed by complex machinery involving a number of proteins and multiple protein complexes. Here we describe the effect of silencing of TbRGG1 gene by RNA interference on RNA editing in procyclic stage of Trypanosoma brucei. TbRGG1 is an essential protein for cell growth, the absence of which results in an overall decline of edited mRNAs, while the levels of never-edited RNAs remain unaltered. Repression of TbRGG1 expression has no effect on the 20S editosome and MRP1/2 complex. TAP-tag purification of TbRGG1 coisolated a novel multiprotein complex, and its association was further verified by TAP-tag analyses of two other components of the complex. TbRGG1 interaction with this complex appears to be mediated by RNA. Our results suggest that the TbRGG1 protein functions in stabilizing edited RNAs or editing efficiency and that the associated novel complex may have a role in mitochondrial RNA metabolism. We provisionally name it putative mitochondrial RNA-binding complex 1 (put-MRB complex 1).

Indexed as

AnimalsBase SequenceDNA PrimersMultiprotein ComplexesProtozoan ProteinsRNARNA-Binding ProteinsRNA EditingRNA InterferenceRNA, MitochondrialRNA, ProtozoanRNA StabilityTrypanosoma brucei bruceiDNA PrimersMultiprotein ComplexesProtozoan ProteinsRNARNA-Binding ProteinsRNA, MitochondrialRNA, ProtozoanTBRGG1 protein, Trypanosoma brucei

Identifiers

PMID18369185
PMCPMC2327366
OpenAlexW2170082865

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.