Evidence map›Paper›PMID 18367519›Full record

ArticleJournal of virology2008

Contribution of CD8+ T cells to containment of viral replication and emergence of mutations in Mamu-A*01-restricted epitopes in Simian immunodeficiency virus-infected rhesus monkeys.

Eun-Young Kim, Ronald S Veazey, Roland Zahn, Kimberly J McEvers, Susanne H C Baumeister, Gabriel J Foster, Melisa D Rett, Michael H Newberg, Marcelo J Kuroda, E Peter Rieber and 5 more

Abstract read
In one paragraph

Article in Journal of virology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 22 citations in OpenAlex.

  1. Review
  2. Genetically barcoded SIV reveals the emergence of escape mutations in multiple viral lineages during immune escape.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  3. Article
  4. Review
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  14. Alcohol's role in HIV transmission and disease progression.Alcohol research & health : the journal of the National Institute on Alcohol Abuse and Alcoholism · 2010
    Review
  15. Article
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 2 countries.

Eun-Young KimDivision of Infectious Diseases, The Feinberg School of Medicine, Northwestern University, 676 N. St. Clair St., Suite 200, Chicago, IL 60611, USA. e-kim@northwestern.edu
Ronald S Veazey
Roland Zahn
Kimberly J McEvers
Susanne H C Baumeister
Gabriel J Foster
Melisa D Rett
Michael H Newberg
Marcelo J Kuroda
E Peter Rieber
Michael Piatak
Jeffrey D Lifson
Norman L Letvin
Steven M Wolinsky
Jörn E Schmitz
Beth Israel Deaconess Medical Center · USNorthwestern University · USTulane University · USNational Cancer Institute · USScience Applications International Corporation (United States) · USTU Dresden · DE

Funding

The impact of HIV viral diversity and cellular immunity on HIV pathogenesisP30AI060354 · NIAID · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI ROBERT A. PARKER · 2004 to 2026
$94.4M
RESOURCE FOR NONHUMAN PRIMATE CELL DEPLETING ANTIBODIESR24RR016001 · NCRR · BETH ISRAEL DEACONESS MEDICAL CENTER · PI REIMANN, KEITH A. · 2000 to 2011
$8.1M
HIGH RESOLUTION STRUCTURAL STUDY OF DSDNA BACTERIOPHAGER01AI040101 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI JOHNSON, JOHN EMIL · 1996 to 2014
$5.2M
IMMUNOREGULATION IN AIDSR01AI020729 · NIAID · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI LETVIN, NORMAN L · 1985 to 2008
$3.1M
Immune control of SIVagm replication in vivoR01AI065335 · NIAID · BETH ISRAEL DEACONESS MEDICAL CENTER · PI SCHMITZ, JOERN E. · 2006 to 2009
$2.9M
CD8 LYMPHOCYTE RESPONSES IN SIV PATHOGENESISR01AI048394 · NIAID · BETH ISRAEL DEACONESS MEDICAL CENTER · PI SCHMITZ, JOERN E. · 2001 to 2004
$1.7M
IMMUNOREGULATION IN AIDSR37AI020729 · NIAID · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI LETVIN, NORMAN L · 1993 to 2002
$1.6M
NCI NIH HHS N01 CO012400NCI NIH HHS N01-CO-12400NCRR NIH HHS R24 RR016001NCRR NIH HHS RR016001NIAID NIH HHS AI040101NIAID NIH HHS AI060354NIAID NIH HHS AI065335NIAID NIH HHS AI20729NIAID NIH HHS AI48394NIAID NIH HHS P30 AI060354NIAID NIH HHS R01 AI020729NIAID NIH HHS R01 AI040101NIAID NIH HHS R01 AI048394NIAID NIH HHS R01 AI065335NIAID NIH HHS R37 AI020729
6 · The paper itself

Abstract

Here, we investigated the containment of virus replication in simian immunodeficiency virus (SIV) infection by CD8(+) lymphocytes. Escape mutations in Mamu-A*01 epitopes appeared first in SIV Tat TL8 and then in SIV Gag p11C. The appearance of escape mutations in SIV Gag p11C was coincident with compensatory changes outside of the epitope. Eliminating CD8(+) lymphocytes from rhesus monkeys during primary infection resulted in more rapid disease progression that was associated with preservation of canonical epitopes. These results confirm the importance of cytotoxic T cells in controlling viremia and the constraint on epitope sequences that require compensatory changes to go to fixation.

Indexed as

Virus ReplicationAnimalsCD8-Positive T-LymphocytesEpitopes, T-LymphocyteGene Products, gagGene Products, tatHistocompatibility Antigens Class IMacaca mulattaMutationSimian Acquired Immunodeficiency SyndromeSimian Immunodeficiency VirusEpitopes, T-LymphocyteGene Products, gagGene Products, tatHistocompatibility Antigens Class IMamu-A 01 antigen

Identifiers

PMID18367519
PMCPMC2395222
OpenAlexW2145001217

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.