Evidence map›Paper›PMID 18364347›Full record

ArticleMolecular & cellular proteomics : MCP2008

Trypanosoma brucei mitochondrial ribosomes: affinity purification and component identification by mass spectrometry.

Alena Zíková, Aswini K Panigrahi, Rachel A Dalley, Nathalie Acestor, Atashi Anupama, Yuko Ogata, Peter J Myler, Kenneth Stuart

Open access · hybridAbstract readValidation Study
In one paragraph

Article in Molecular & cellular proteomics : MCP, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 95 citations in OpenAlex.

  1. Article
  2. Ribosome Specialization in Protozoa Parasites.International journal of molecular sciences · 2023
    Review
  3. Article
  4. Article
  5. Article
  6. Mitochondrial RNA quality control in trypanosomes.Wiley interdisciplinary reviews. RNA · 2021
    Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Prediction of Protein Complexes inMolecular & cellular proteomics : MCP · 2017
    Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Alena ZíkováSeattle Biomedical Research Institute, Seattle, Washington 98109, USA.
Aswini K Panigrahi
Rachel A Dalley
Nathalie Acestor
Atashi Anupama
Yuko Ogata
Peter J Myler
Kenneth Stuart
Center for Infectious Disease Research · US

Funding

T. brucei Mitochondrial ProteomeR01AI065935 · NIAID · SEATTLE BIOMEDICAL RESEARCH INSTITUTE · PI STUART, KENNETH D · 2005 to 2009
$3.9M
NIAID NIH HHS AI065935NIAID NIH HHS R01 AI065935
6 · The paper itself

Abstract

Although eukaryotic mitochondrial (mt) ribosomes evolved from a putative prokaryotic ancestor their compositions vary considerably among organisms. We determined the protein composition of tandem affinity-purified Trypanosoma brucei mt ribosomes by mass spectrometry and identified 133 proteins of which 77 were associated with the large subunit and 56 were associated with the small subunit. Comparisons with bacterial and mammalian mt ribosomal proteins identified T. brucei mt homologs of L2-4, L7/12, L9, L11, L13-17, L20-24, L27-30, L33, L38, L43, L46, L47, L49, L52, S5, S6, S8, S9, S11, S15-18, S29, and S34, although the degree of conservation varied widely. Sequence characteristics of some of the component proteins indicated apparent functions in rRNA modification and processing, protein assembly, and mitochondrial metabolism implying possible additional roles for these proteins. Nevertheless most of the identified proteins have no homology outside Kinetoplastida implying very low conservation and/or a divergent function in kinetoplastid mitochondria.

Indexed as

AlgorithmsAnimalsAnimals, Genetically ModifiedCells, CulturedChromatography, AffinityMass SpectrometryMitochondriaRibosomal ProteinsRibosomesRibosome SubunitsStaining and LabelingTrypanosoma brucei bruceiRibosomal Proteins

Identifiers

PMID18364347
PMCPMC2493383
OpenAlexW2160059163

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.