Evidence map›Paper›PMID 18364245›Full record

ArticleInternational journal for parasitology2008

Characterization of the promoter of the Brugia malayi 12kDa small subunit ribosomal protein (RPS12) gene.

Ana de Oliveira, Charles R Katholi, Thomas R Unnasch

Open access · greenAbstract read
In one paragraph

Article in International journal for parasitology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.8field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. In vivo imaging of transgenic Brugia malayi.PLoS neglected tropical diseases · 2020
    Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Functional analysis of putative operons in Brugia malayi.International journal for parasitology · 2010
    Article
  12. Helminth genomics: The implications for human health.PLoS neglected tropical diseases · 2009
    Review
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Ana de OliveiraGorgas Center for Geographic Medicine, University of Alabama at Birmingham, USA.
Charles R Katholi
Thomas R Unnasch
University of Alabama at Birmingham · USUniversity of South Florida · US

Funding

Transfection and analysis of transcription in B. malayiR01AI048562 · NIAID · UNIVERSITY OF SOUTH FLORIDA · PI UNNASCH, THOMAS R · 2001 to 2009
$2.7M
NIAID NIH HHS R01 AI048562NIAID NIH HHS R01AI048562
6 · The paper itself

Abstract

Unravelling gene regulatory mechanisms in human filarial parasites will require an understanding of their basic promoter structure. Only a single promoter from a human filarial parasite has been characterised in detail, the 70 kDa heat shock promoter of Brugia malayi (BmHSP70). This promoter was found to lack features found in a typical eukaryotic promoter. To determine if this was unique to the BmHSP70 promoter, a detailed analysis was undertaken of the promoter for the B. malayi small subunit 12 kDa ribosomal protein (BmRPS12) gene. The BmRPS12 promoter contained a unique tandem repeat structure. Deletion of these repeats resulted in the loss of 80% of promoter activity. Block replacement mutagenesis identified five regions outside the repeat which were essential for promoter activity. No predicted binding sites for proteins that normally associate with the typical eukaryotic core promoter domains were found in the essential domains or the repeat region. However, the repeat region contained many putative binding sites for GATAA transcription factor family proteins. Of 20 upstream domains of other ribosomal protein genes, one contained a repeat structure similar to that found in the BmRPS12 promoter, and the majority encoded putative GATAA transcription factor binding sites. This study demonstrates that the BmRPS12 promoter, like the BmHSP70 promoter, is distinct from a typical eukaryotic promoter.

Indexed as

Genes, HelminthAnimalsBrugia malayiComputational BiologyGene Expression RegulationHelminth ProteinsMitochondrial ProteinsMutagenesisPromoter Regions, GeneticRibosomal ProteinsTandem Repeat SequencesTransfectionHelminth ProteinsMitochondrial Proteinsmitochondrial ribosomal protein S12Ribosomal Proteins

Identifiers

PMID18364245
PMCPMC2577030
OpenAlexW1978116472

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.