Evidence map›Paper›PMID 18363648›Full record

ArticleMolecular microbiology2008

TtsI regulates symbiotic genes in Rhizobium species NGR234 by binding to tts boxes.

Roseli Wassem, Hajime Kobayashi, Kumiko Kambara, Antoine Le Quéré, Graham C Walker, William J Broughton, William J Deakin

Open access · bronzeAbstract read
In one paragraph

Article in Molecular microbiology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
10.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 73 citations in OpenAlex.

  1. Article
  2. Article
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  4. Article
  5. Review
  6. Review
  7. The NEL Family of Bacterial E3 Ubiquitin Ligases.International journal of molecular sciences · 2022
    Review
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  9. Article
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  11. Article
  12. Article
  13. The rhizobial type III effector ErnA confers the ability to form nodules in legumes.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  14. Article
  15. Article
  16. Article
  17. InnB, a Novel Type III Effector ofFrontiers in microbiology · 2018
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Roseli WassemLaboratoire de Biologie Moléculaire des Plantes Supérieures, Sciences III, 30 Quai Ernest-Ansermet, Université de Genève, CH-1211 Geneva 4, Switzerland.
Hajime Kobayashi
Kumiko Kambara
Antoine Le Quéré
Graham C Walker
William J Broughton
William J Deakin
Massachusetts Institute of Technology · US

Funding

MOLEULAR GENETICS OF RHIZOBIUM PLASMIDSR01GM031030 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI WALKER, GRAHAM C · 1985 to 2020
$8.6M
Howard Hughes Medical InstituteNIGMS NIH HHS GM31010NIGMS NIH HHS R01 GM031030
6 · The paper itself

Abstract

Infection of legumes by Rhizobium sp. NGR234 and subsequent development of nitrogen-fixing nodules are dependent on the coordinated actions of Nod factors, proteins secreted by a type III secretion system (T3SS) and modifications to surface polysaccharides. The production of these signal molecules is dependent on plant flavonoids which trigger a regulatory cascade controlled by the transcriptional activators NodD1, NodD2, SyrM2 and TtsI. TtsI is known to control the genes responsible for T3SS function and synthesis of a symbiotically important rhamnose-rich lipo-polysaccharide, most probably by binding to cis elements termed tts boxes. Eleven tts boxes were identified in the promoter regions of target genes on the symbiotic plasmid of NGR234. Expression profiles of lacZ fusions to these tts boxes showed that they are part of a TtsI-dependent regulon induced by plant-derived flavonoids. TtsI was purified and demonstrated to bind directly to two of these tts boxes. DNase I footprinting revealed that TtsI occupied not only the tts box consensus sequence, but also upstream and downstream regions in a concentration-dependent manner. Highly conserved bases of the consensus tts box were mutated and, although TtsI binding was still observed in vitro, gfp fusions were no longer transcribed in vivo. Random mutagenesis of a tts box-containing promoter revealed more nucleotides critical for transcriptional activity outside of the consensus.

Indexed as

Gene Expression Regulation, BacterialResponse ElementsSymbiosisBacterial ProteinsBase SequenceConsensus SequenceDNA FootprintingElectrophoretic Mobility Shift AssayGenes, BacterialGenes, ReporterMolecular Sequence DataPromoter Regions, GeneticRhizobiumSequence DeletionTrans-ActivatorsTranscription, GeneticBacterial ProteinsTrans-Activators

Identifiers

PMID18363648
PMCPMC2770584
OpenAlexW2129456709

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.