Evidence map›Paper›PMID 18360708›Full record

ArticleInternational journal of oncology2008

Gene alterations by peroxisome proliferator-activated receptor gamma agonists in human colorectal cancer cells.

Maria Cekanova, Joshua S Yuan, Xiuoon Li, Kyubo Kim, Seung Joon Baek

Open access · bronzeAbstract read
In one paragraph

Article in International journal of oncology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. A Pea (Foods (Basel, Switzerland) · 2020
    Article
  5. From Selenium Absorption to Selenoprotein Degradation.Biological trace element research · 2019
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. PPAR gamma, bioactive lipids, and cancer progression.Frontiers in bioscience (Landmark edition) · 2012
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Maria CekanovaLaboratory of Environmental Carcinogenesis, Department of Pathobiology, College of Veterinary Medicine, The University of Tennessee, Knoxville, TN 37996, USA.
Joshua S Yuan
Xiuoon Li
Kyubo Kim
Seung Joon Baek
University of Tennessee at Knoxville · US

Funding

PPAR-gamma ligands in colorectal cancerR01CA108975 · NCI · UNIVERSITY OF TENNESSEE KNOXVILLE · PI BAEK, SEUNG JOON · 2006 to 2010
$1.0M
NCI NIH HHS R01 CA108975NCI NIH HHS R01-CA108975
6 · The paper itself

Abstract

The peroxisome proliferator-activated receptor gamma (PPARgamma) is a nuclear transcription factor that controls the genes involved in metabolism and carcinogenesis. In the present study, we examined the alteration of gene expression in HCT-116 human colorectal cancer cells by PPARgamma agonists: MCC-555 (5 microM), rosiglitazone (5 microM), and 15-deoxy-Delta12,14-prostaglandin J2 (1 microM). The long-oligo microarray data revealed a list of target genes commonly induced (307 genes) and repressed (32 genes) by tested PPARgamma agonists. These genes were analyzed by Onto-Express software and KEGG pathway analysis and revealed that PPARgamma agonists are involved in cell proliferation, focal adhesion, and several signaling pathways. Eight genes were selected to confirm the microarray data by RT-PCR and real-time PCR, from which CSTA, DAP13, TAF12, RIS1, CDKN3 and MAGOH were up-regulated, and KLHL11 and NCOA2 were down-regulated. This study elucidates the commonly induced genes modulated by tested PPARgamma ligands involved in the different signaling pathways and metabolisms, probably mediated in a PPARgamma-dependent manner in colorectal cancer cells and helps to better understand the pleiotropic actions of PPARgamma ligands.

Indexed as

Colorectal NeoplasmsGene Expression ProfilingGene Expression Regulation, NeoplasticHCT116 CellsHumansPPAR gammaProstaglandin D2Reverse Transcriptase Polymerase Chain ReactionRosiglitazoneSignal TransductionThiazolidinedionesTranscriptional Activation15-deoxyprostaglandin J2PPAR gammaProstaglandin D2RosiglitazoneThiazolidinediones

Identifiers

PMID18360708
PMCPMC2504864
OpenAlexW1965857197

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.