Evidence map›Paper›PMID 18359831›Full record

ArticleApplied and environmental microbiology2008

Assessment of the genetic diversity of Xanthomonas axonopodis pv. phaseoli and Xanthomonas fuscans subsp. fuscans as a basis to identify putative pathogenicity genes and a type III secretion system of the SPI-1 family by multiple suppression subtractive hybridizations.

Seyed Mehdi Alavi, Saeideh Sanjari, Fabien Durand, Chrystelle Brin, Charles Manceau, Stéphane Poussier

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

  1. Article
  2. Article
  3. Whole Genome Sequences of NineMicrobiology resource announcements · 2023
    Article
  4. Article
  5. Genomic and phenotypic insight intoFrontiers in microbiology · 2023
    Article
  6. Article
  7. Secrete or perish: The role of secretion systems inComputational and structural biotechnology journal · 2021
    Review
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Review
  15. Scientific Opinion on the pest categorisation ofEFSA journal. European Food Safety Authority · 2014
    Article
  16. Review
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Seyed Mehdi AlaviUMR PaVé, INRA, 42 rue Georges Morel, 49071 Beaucouzé Cedex 1, France.
Saeideh Sanjari
Fabien Durand
Chrystelle Brin
Charles Manceau
Stéphane Poussier

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Fluorescent amplified fragment length polymorphism revealed that strains of Xanthomonas axonopodis pv. phaseoli and Xanthomonas fuscans subsp. fuscans are genetically distinct and can be grouped into four genetic lineages. Four suppression subtractive hybridizations were then performed to isolate DNA fragments present in these bean pathogens and absent from closely related xanthomonads. Virulence gene candidates were identified such as homologs of hemagglutinins, TonB-dependent receptors, zinc-dependent metalloproteases, type III effectors, and type IV secretion system components. Unexpectedly, homologs of the type III secretion apparatus components (SPI-1 family), usually reported in animal pathogens and insect symbionts, were also detected.

Indexed as

Genetic VariationAmplified Fragment Length Polymorphism AnalysisBacterial ProteinsCluster AnalysisGenes, BacterialGenotypeMembrane Transport ProteinsNucleic Acid HybridizationPhylogenyVirulence FactorsXanthomonasBacterial ProteinsMembrane Transport ProteinsVirulence Factors

Identifiers

PMID18359831
PMCPMC2394934

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.