Evidence map›Paper›PMID 18353949›Full record

ArticleJournal of virology2008

An alteration of human immunodeficiency virus gp41 leads to reduced CCR5 dependence and CD4 independence.

Brian M Taylor, J Scott Foulke, Robin Flinko, Alonso Heredia, Anthony DeVico, Marvin Reitz

Abstract read
In one paragraph

Article in Journal of virology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
1.1field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 43 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. The major genetic risk factor for severe COVID-19 is associated with protection against HIV.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
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  19. Lens epithelium-derived growth factor/p75 qualifies as a target for HIV gene therapy in the NSG mouse model.Molecular therapy : the journal of the American Society of Gene Therapy · 2012
    Article
  20. The HIV-1 env protein: a coat of many colors.Current HIV/AIDS reports · 2012
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 2 countries.

Brian M TaylorInstitute of Human Virology, School of Medicine, and Department of Microbiology and Immunology, University of Maryland Baltimore, 725 W. Lombard St., Baltimore, Maryland 21201, USA.
J Scott Foulke
Robin Flinko
Alonso Heredia
Anthony DeVico
Marvin Reitz
Institute of Human Virology · NG

Funding

HIV Vaccines Based on GP120-CD4 Mimetic ComplexesR01AI060481 · NIAID · UNIVERSITY OF MD BIOTECHNOLOGY INSTITUTE · PI DEVICO, ANTHONY L · 2005 to 2008
$1.6M
HIV-1 PASSIVE IMMUNITY AGAINST CORECEPTOR INTERACTIONSR01HL059796 · NHLBI · UNIVERSITY OF MD BIOTECHNOLOGY INSTITUTE · PI DEVICO, ANTHONY L · 1997 to 2001
$673k
NHLBI NIH HHS R01 HL59796NIAID NIH HHS R01 AI060481NIAID NIH HHS R01 AI060481-03
6 · The paper itself

Abstract

Human immunodeficiency virus (HIV) type 1 infection requires functional interactions of the viral surface (gp120) glycoprotein with cell surface CD4 and a chemokine coreceptor (usually CCR5 or CXCR4) and of the viral transmembrane (gp41) glycoprotein with the target cell membrane. Extensive genetic variability, generally in gp120 and the gp41 ectodomain, can result in altered coreceptor use, fusion kinetics, and neutralization sensitivity. Here we describe an R5 HIV variant that, in contrast to its parental virus, infects T-cell lines expressing low levels of cell surface CCR5. This correlated with an ability to infect cells in the absence of CD4, increased sensitivity to a neutralizing antibody recognizing the coreceptor binding site of gp120, and increased resistance to the fusion inhibitor T-20. Surprisingly, these properties were determined by alterations in gp41, including the cytoplasmic tail, a region not previously shown to influence coreceptor use. These data indicate that HIV infection of cells with limiting levels of cell surface CCR5 can be facilitated by gp41 sequences that are not exposed on the envelope ectodomain yet induce allosteric changes in gp120 that facilitate exposure of the CCR5 binding site.

Indexed as

Amino Acid SequenceAnimalsCD4 AntigensCell LineChlorocebus aethiopsHIV-1HIV Envelope Protein gp120HIV Envelope Protein gp41HumansMolecular Sequence DataReceptors, CCR5Sensitivity and SpecificitySequence AlignmentT-LymphocytesVirionCD4 Antigensgp120 protein, Human immunodeficiency virus 1HIV Envelope Protein gp120HIV Envelope Protein gp41Receptors, CCR5

Identifiers

PMID18353949
PMCPMC2395218
OpenAlexW2032715624

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.