Evidence map›Paper›PMID 18353945›Full record

ArticleJournal of virology2008

HLA class I-restricted T-cell responses may contribute to the control of human immunodeficiency virus infection, but such responses are not always necessary for long-term virus control.

Brinda Emu, Elizabeth Sinclair, Hiroyu Hatano, April Ferre, Barbara Shacklett, Jeffrey N Martin, J M McCune, Steven G Deeks

Abstract read
In one paragraph

Article in Journal of virology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 153 papers.

0numbers the graph read from it
0cells of the map it votes in
153citing papers in PubMed
8.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

153 citing papers in PubMed, 218 citations in OpenAlex.

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93 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Brinda EmuPositive Health Program, Department of Medicine, San Francisco General Hospital, University of California, San Francisco, California, USA. brinda.emu@ucsf.edu
Elizabeth Sinclair
Hiroyu Hatano
April Ferre
Barbara Shacklett
Jeffrey N Martin
J M McCune
Steven G Deeks
San Francisco General Hospital · USUniversity of California, San Francisco · USUniversity of California, Davis · US

Funding

UCSF CLINICAL AND TRANSLATIONAL SCIENCE INSTITUTEUL1RR024131 · NCRR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI JOHNSTON, S. CLAIBORNE · 2006 to 2011
$111.2M
Ujima Mentoring ProgramP30MH062246 · NIMH · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Sheri Ann Lippman · 2001 to 2026
$57.4M
HIV-Specific T Cell Responses in Rectal MucosaR01AI057020 · NIAID · UNIVERSITY OF CALIFORNIA DAVIS · PI SHACKLETT, BARBARA L. · 2003 to 2016
$6.2M
NIH Director's Pioneer Award (RMI)DP1OD000329 · OD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MCCUNE, JOSEPH M · 2004 to 2008
$4.2M
FLOW CYTOMETRY STUDY OF T CELL RESPONSES TO HIV VACCINESR01AI047062 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MCCUNE, JOSEPH M · 2000 to 2007
$3.6M
Thymic Function in Adults With HIV-1 DiseaseU01AI043864 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MCCUNE, JOSEPH M · 2003 to 2007
$3.0M
Immunologic Control of Drug-resistant HIV-1R01AI052745 · NIAID · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI DEEKS, STEVEN GRANT · 2002 to 2005
$2.0M
DYNAMICS OF HIV1 SPECIFIC CTL IN HIV1 INFECTIONR01AI044595 · NIAID · J. DAVID GLADSTONE INSTITUTES · PI NIXON, DOUGLAS F · 1999 to 2003
$1.3M
THYMIC FUNCTION IN ADULTS WITH HIV1 DISEASER01AI043864 · NIAID · J. DAVID GLADSTONE INSTITUTES · PI MCCUNE, JOSEPH M · 1999 to 2002
$1.2M
Treatment Intensification for Drug-Resistant HIVR21AI055273 · NIAID · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI DEEKS, STEVEN GRANT · 2003 to 2004
$454k
NCRR NIH HHS UL1 RR024131NCRR NIH HHS UL1 RR024131-01NIAID NIH HHS AI052745NIAID NIH HHS AI055273NIAID NIH HHS AI057020NIAID NIH HHS AI43864NIAID NIH HHS AI44595NIAID NIH HHS AI47062NIAID NIH HHS R01 AI043864NIAID NIH HHS R01 AI044595NIAID NIH HHS R01 AI047062NIAID NIH HHS R01 AI052745NIAID NIH HHS R01 AI057020NIAID NIH HHS R21 AI055273NIAID NIH HHS U01 AI043864NIH HHS DP1 OD000329NIMH NIH HHS P30 MH062246NIMH NIH HHS P30 MH62246
6 · The paper itself

Abstract

A rare subset of human immunodeficiency virus (HIV)-infected individuals maintains undetectable HIV RNA levels without therapy ("elite controllers"). To clarify the role of T-cell responses in mediating virus control, we compared HLA class I polymorphisms and HIV-specific T-cell responses among a large cohort of elite controllers (HIV-RNA < 75 copies/ml), "viremic" controllers (low-level viremia without therapy), "noncontrollers" (high-level viremia), and "antiretroviral therapy suppressed" individuals (undetectable HIV-RNA levels on antiretroviral therapy). The proportion of CD4(+) and CD8(+) T cells that produce gamma interferon (IFN-gamma) and interleukin-2 (IL-2) in response to Gag and Pol peptides was highest in the elite and viremic controllers (P < 0.0001). Forty percent of the elite controllers were HLA-B*57 compared to twenty-three percent of viremic controllers and nine percent of noncontrollers (P < 0.001). Other HLA class I alleles more common in elite controllers included HLA-B*13, HLA-B*58, and HLA-B*81 (P < 0.05 for each). Within elite and viremic controller groups, those with protective class I alleles had higher frequencies of Gag-specific CD8(+) T cells than those without these alleles (P = 0.01). Noncontrollers, with or without protective alleles, had low-level CD8(+) responses. Thus, certain HLA class I alleles are enriched in HIV controllers and are associated with strong Gag-specific CD8(+)IFN-gamma(+)IL-2(+) T cells. However, the absence of evidence of T cell-mediated control in many controllers suggests the presence of alternative mechanisms for viral control in these individuals. Defining mechanisms for virus control in "non-T-cell controllers" might lead to insights into preventing HIV transmission or preventing virus replication.

Indexed as

AllelesCD4-Positive T-LymphocytesCD8-Positive T-LymphocytesHealthHistocompatibility Antigens Class IHIV-1HIV InfectionsHumansInterferon-gammaInterleukin-2Time FactorsHistocompatibility Antigens Class IInterferon-gammaInterleukin-2

Identifiers

PMID18353945
PMCPMC2395228
OpenAlexW2171754982

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.