Evidence map›Paper›PMID 18348863›Full record

ArticleBiochemical and biophysical research communications2008

Mechanism of copper induced fluorescence quenching of red fluorescent protein, DsRed.

Yasmeen Rahimi, Ann Goulding, Suresh Shrestha, Sweetie Mirpuri, Sapna K Deo

Open access · greenAbstract read
In one paragraph

Article in Biochemical and biophysical research communications, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
4.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 82 citations in OpenAlex.

  1. Recognition of CuSensors (Basel, Switzerland) · 2026
    Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Applications of CuJournal of functional biomaterials · 2024
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Leveraging synthetic chlorins for bio-imaging applications.Chemical communications (Cambridge, England) · 2020
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Yasmeen RahimiDepartment of Chemistry & Chemical Biology, Indiana University Purdue University Indianapolis, 402 N. Blackford Street, LD326C, Indianapolis, IN 46202, USA.
Ann Goulding
Suresh Shrestha
Sweetie Mirpuri
Sapna K Deo
Indiana University – Purdue University Indianapolis · US

Funding

Highly Sensitive and Rapid Mix-and-Measure Detection Method for microRNAs in a CeR03EB008231 · NIBIB · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI DEO, SAPNA K. · 2007 to 2007
$74k
NIBIB NIH HHS R03 EB008231
6 · The paper itself

Abstract

The red fluorescent protein, DsRed, and a few of its mutants have been shown to bind copper ions resulting in quenching of its fluorescence. The response to Cu(2+) is rapid, selective, and reversible upon addition of a copper chelator. DsRed has been employed as an in vitro probe for Cu(2+) determination by us and other groups. It is also envisioned that DsRed can serve as an intracellular genetically encoded indicator of Cu(2+) concentration, and can be targeted to desired subcellular locations for Cu(2+) determination. However, no information has been reported yet regarding the mechanism of the fluorescence quenching of DsRed in the presence of Cu(2+). In this work, we have performed spectroscopic investigations to determine the mechanism of quenching of DsRed fluorescence in the presence of Cu(2+). We have studied the effect of Cu(2+) addition on two representative mutants of DsRed, specifically, DsRed-Monomer and DsRed-Express. Both proteins bind Cu(2+) with micromolar affinities. Stern-Volmer plots generated at different temperatures indicate a static quenching process in the case of both proteins in the presence of Cu(2+). This mechanism was further studied using absorption spectroscopy. Stern-Volmer constants and quenching rate constants support the observation of static quenching in DsRed in the presence of Cu(2+). Circular dichroism (CD)-spectroscopic studies revealed no effect of Cu(2+)-binding on the secondary structure or conformation of the protein. The effect of pH changes on the quenching of DsRed fluorescence in the presence of copper resulted in pK(a) values indicative of histidine and cysteine residue involvement in Cu(2+)-binding.

Indexed as

AnimalsCircular DichroismCopperCysteineFluorescenceHistidineLuminescent ProteinsMutationProtein BindingProtein Structure, SecondarySpectrophotometry, UltravioletCopperCysteinefluorescent protein 583HistidineLuminescent Proteins

Identifiers

PMID18348863
PMCPMC2527065
OpenAlexW2074904958

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.