Evidence map›Paper›PMID 18347845›Full record

ArticleMicrobial ecology2008

Bacterial diversity of the broadbalk 'classical' winter wheat experiment in relation to long-term fertilizer inputs.

Lesley A Ogilvie, Penny R Hirsch, Andrew W B Johnston

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Microbial ecology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

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  11. Impacts of nitrogen application rates on the activity and diversity of denitrifying bacteria in the Broadbalk Wheat Experiment.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2012
    Article
  12. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Lesley A OgilvieCentre for Soils and Ecosystem Function, Department of Plant Pathology and Microbiology, Rothamsted Research, Harpenden, Hertfordshire, AL5 2JQ, UK. ogilvie.lesley@gmail.com
Penny R Hirsch
Andrew W B Johnston

Funding

Biotechnology and Biological Sciences Research Council BBS/E/C/00004175Biotechnology and Biological Sciences Research Council BBS/E/C/00004961
6 · The paper itself

Abstract

With more than 160 years of contrasting fertilizer regimes, the Broadbalk winter wheat experiment represents a unique experimental resource for studying the effects of long-term fertilizer application on microbial population diversity. Using DGGE and clone library analysis, we report here on eubacterial species diversity (16S rRNA gene) and diversity within two sets of gene products associated with microbial N acquisition: NifH (nitrogen fixation) and AmtB (ammonium transport). Comparisons were made within and between soils treated with mineral N fertilizer, farmyard manure or receiving no fertilizer. Analysis of 16S rRNA gene DGGE profiles showed no clear patterns to qualitatively distinguish bacterial community structure between the three different treatments (P > 0.05), with all samples containing a range of eubacterial taxa similar to those that are characteristic of soil bacteria reported elsewhere. Intra-plot heterogeneity was high and of a similar magnitude to that between treatments. This lack of qualitative between plot differences was echoed in the representative sequences of 16S rRNA, nifH, and amtB genes in the various samples. Taken together, both phylogenetic and functional gene analyses showed bacterial communities in the Broadbalk-trial soil were very stable and relatively non-responsive to long-term management of balanced fertilizer inputs.

Indexed as

Soil MicrobiologyAmino Acid SequenceBacteriaBase SequenceCation Transport ProteinsDNA, BacterialElectrophoresis, Polyacrylamide GelFertilizersGenetic VariationMolecular Sequence DataOxidoreductasesPhylogenyPolymerase Chain ReactionRNA, Ribosomal, 16SCation Transport ProteinsDNA, BacterialFertilizersnitrogenase reductaseOxidoreductasesRNA, Ribosomal, 16S

Identifiers

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.