Evidence map›Paper›PMID 18347774›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2008

A grapevine (Vitis vinifera L.) genetic map integrating the position of 139 expressed genes.

Marzia Salmaso, Giulia Malacarne, Michela Troggio, Giorgia Faes, Marco Stefanini, M Stella Grando, Riccardo Velasco

Abstract read
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In one paragraph

Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
13.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 75 citations in OpenAlex.

  1. Article
  2. A high-density integrated map for grapevine based on three mapping populations genotyped by the Vitis18K SNP chip.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022
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  7. TheFrontiers in plant science · 2019
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  8. Article
  9. Article
  10. Article
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  12. Article
  13. SSR and SRAP marker-based linkage map ofBiotechnology, biotechnological equipment · 2014
    Article
  14. Article
  15. Mapping genetic loci for tolerance to lime-induced iron deficiency chlorosis in grapevine rootstocks (Vitis sp.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2013
    Article
  16. Article
  17. Rpv10: a new locus from the Asian Vitis gene pool for pyramiding downy mildew resistance loci in grapevine.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2012
    Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Marzia SalmasoGenetics and Molecular Biology Department, Istituto Agrario San Michele all'Adige, via Mach 1, 38010 San Michele a/A (TN), Italy. marzia.salmaso@gmail.com
Giulia Malacarne
Michela Troggio
Giorgia Faes
Marco Stefanini
M Stella Grando
Riccardo Velasco
Fondazione Edmund Mach · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Grapevine molecular maps based on microsatellites, AFLP and RAPD markers are now available. SSRs are essential to allow cross-talks between maps, thus upgrading any growing grapevine maps. In this work, single nucleotide polymorphisms (SNPs) were developed from coding sequences and from unique BAC-end sequences, and nested in a SSR framework map of grapevine. Genes participating to flavonoids metabolism and defence, and signal transduction pathways related genes were also considered. Primer pairs for 351 loci were developed from ESTs present on public databases and screened for polymorphism in the "Merzling" (a complex genotype Freiburg 993-60 derived from multiple crosses also involving wild Vitis species) x Vitis vinifera (cv. Teroldego) cross population. In total 138 SNPs, 108 SSR markers and a phenotypic trait (berry colour) were mapped in 19 major linkage groups of the consensus map. In specific cases, ESTs with putatively related functions mapped near QTLs previously identified for resistance and berry ripening. Genes related to anthocyanin metabolism mapped in different linkage groups. A myb gene, which has been correlated with anthocyanin biosynthesis, cosegregated with berry colour on linkage group 2. The possibility of associating candidate genes to known position of QTL is discussed for this plant.

Indexed as

Chromosome MappingGenetic LinkageQuantitative Trait LociChromosomes, PlantCrosses, GeneticExpressed Sequence TagsGenes, PlantMinisatellite RepeatsPhenotypePolymorphism, Single NucleotideVitis

Identifiers

PMID18347774
OpenAlexW2092674131

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.