Evidence map›Paper›PMID 18347099›Full record

ArticleGenes & development2008

Auxin influx carriers stabilize phyllotactic patterning.

Katherine Bainbridge, Soazig Guyomarc'h, Emmanuelle Bayer, Ranjan Swarup, Malcolm Bennett, Therese Mandel, Cris Kuhlemeier

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 122 papers.

0numbers the graph read from it
0cells of the map it votes in
122citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

122 citing papers in PubMed, 272 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Structural basis of auxin binding and transport byProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Auxin and abiotic stress responses.Journal of experimental botany · 2023
    Review
  13. Article
  14. Article
  15. Transcriptomic Evidence Reveals Low Gelatinous Layer Biosynthesis inInternational journal of molecular sciences · 2022
    Article
  16. Article
  17. Article
  18. Functional Characterization ofInternational journal of molecular sciences · 2022
    Article
  19. Auxin Transporters-A Biochemical View.Cold Spring Harbor perspectives in biology · 2022
    Review
  20. Article

62 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Katherine BainbridgeInstitute of Plant Sciences, University of Bern, Altenbergrain 21, 3013 Bern, Switzerland.
Soazig Guyomarc'h
Emmanuelle Bayer
Ranjan Swarup
Malcolm Bennett
Therese Mandel
Cris Kuhlemeier
University of Bern · CHUniversity of Nottingham · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

One of the most striking features of plant architecture is the regular arrangement of leaves and flowers around the stem, known as phyllotaxis. Peaks in concentration of the plant hormone auxin, generated by the polar localization of the PIN1 auxin efflux carrier, provide the instructive signal for primordium initiation. This mechanism generates the spacing between neighboring primordia, which results in regular phyllotaxis. Studies of the role of auxin transport in phyllotactic patterning have focused on PIN1-mediated efflux. Recent computer simulations indicate an additional role for transporter-mediated auxin uptake. Mutations in the AUX1 auxin influx carrier have not, however, been reported to cause an aerial phenotype. Here, we study the role of AUX1 and its paralogs LAX1, LAX2, and LAX3. Analysis of the quadruple mutant reveals irregular divergence angles between successive primordia. A highly unusual aspect of the phenotype is the occurrence of clusters of primordia, in violation of classical theory. At the molecular level, the sharp peaks in auxin levels and coordinated PIN polarization are reduced or lost. In addition, the increased penetrance of the phenotype under short-day conditions suggests that the AUX LAX transporters act to buffer the PIN-mediated patterning mechanism against environmental or developmental influences.

Indexed as

ArabidopsisArabidopsis ProteinsBiological TransportBody PatterningCarrier ProteinsDNA PrimersGene Expression Regulation, PlantIndoleacetic AcidsMembrane Transport ProteinsMutationPlant LeavesPlant StemsReverse Transcriptase Polymerase Chain ReactionRNA, MessengerArabidopsis ProteinsAUX1 protein, ArabidopsisCarrier ProteinsDNA PrimersIndoleacetic AcidsMembrane Transport ProteinsPIN1 protein, ArabidopsisRNA, Messenger

Identifiers

PMID18347099
PMCPMC2275433
OpenAlexW2158511593

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.