Evidence map›Paper›PMID 18347065›Full record

ArticleThe Journal of cell biology2008

Orchestration of the S-phase and DNA damage checkpoint pathways by replication forks from early origins.

Julie M Caldwell, Yinhuai Chen, Kaila L Schollaert, James F Theis, George F Babcock, Carol S Newlon, Yolanda Sanchez

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of cell biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
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  7. ATRMec1 phosphorylation-independent activation of Chk1 in vivo.The Journal of biological chemistry · 2009
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Julie M CaldwellDepartment of Molecular Genetics, Biochemistry, and Microbiology, University of Cincinnati College of Medicine, Cincinnati, OH 45267, USA.
Yinhuai Chen
Kaila L Schollaert
James F Theis
George F Babcock
Carol S Newlon
Yolanda Sanchez
Laboratory of Molecular Genetics · PLDartmouth College · USIndiana University Bloomington · USShriners Hospitals for Children - Cincinnati · US

Funding

Translational Engineering in Cancer (TEC)P30CA023108 · NCI · DARTMOUTH COLLEGE · PI Steven D Leach · 1985 to 2026
$91.3M
Transgenic/KnockoutP01AI056299 · NIAID · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI SHARPE, ARLENE H. · 2003 to 2023
$42.5M
REPRODUCTIVE AND DEVELOPMENTAL TOXICOLOGY RESEARCHP30ES006096 · NIEHS · UNIVERSITY OF CINCINNATI · PI YADAV, JAGJIT S · 1992 to 2022
$35.4M
Plk3 variants in transgenic mice and MEFsU01ES011038 · NIEHS · UNIVERSITY OF CINCINNATI · PI STAMBROOK, PETER J. · 2001 to 2006
$6.7M
DNA REPLICATION IN SACCHAROMYCES CEREVISIAER01GM035679 · NIGMS · UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL · PI NEWLON, CAROL S. · 1985 to 2006
$4.3M
DISSECTION OF THE DNA DAMAGE CHECKPOINT PATHWAYSR01CA084463 · NCI · UNIVERSITY OF CINCINNATI · PI SANCHEZ, YOLANDA · 2000 to 2009
$2.7M
NCI NIH HHS P30 CA023108NCI NIH HHS R01 CA084463NCI NIH HHS R01 CA84463NIAID NIH HHS P01 AI056299NIEHS NIH HHS P30 ES006096NIEHS NIH HHS P30 ES06096NIEHS NIH HHS U01 ES011038NIEHS NIH HHS U01 ES11038NIGMS NIH HHS R01 GM035679NIGMS NIH HHS R01 GM35679
6 · The paper itself

Abstract

The S-phase checkpoint activated at replication forks coordinates DNA replication when forks stall because of DNA damage or low deoxyribonucleotide triphosphate pools. We explore the involvement of replication forks in coordinating the S-phase checkpoint using dun1Delta cells that have a defect in the number of stalled forks formed from early origins and are dependent on the DNA damage Chk1p pathway for survival when replication is stalled. We show that providing additional origins activated in early S phase and establishing a paused fork at a replication fork pause site restores S-phase checkpoint signaling to chk1Delta dun1Delta cells and relieves the reliance on the DNA damage checkpoint pathway. Origin licensing and activation are controlled by the cyclin-Cdk complexes. Thus, oncogene-mediated deregulation of cyclins in the early stages of cancer development could contribute to genomic instability through a deficiency in the forks required to establish the S-phase checkpoint.

Indexed as

Cell Cycle ProteinsCell DivisionCell Transformation, NeoplasticCheckpoint Kinase 1Cyclin-Dependent KinasesCyclinsDNA DamageDNA ReplicationGene Expression Regulation, FungalGenes, cdcGenomic InstabilityProtein KinasesProtein Serine-Threonine KinasesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsS PhaseCell Cycle ProteinsCheckpoint Kinase 1Cyclin-Dependent KinasesCyclinsDUN1 protein, S cerevisiaeProtein KinasesProtein Serine-Threonine KinasesSaccharomyces cerevisiae Proteins

Identifiers

PMID18347065
PMCPMC2290838
OpenAlexW2108992531

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.