Evidence map›Paper›PMID 18347053›Full record

ArticleMolecular and cellular biology2008

Silencing of Agamma-globin gene expression during adult definitive erythropoiesis mediated by GATA-1-FOG-1-Mi2 complex binding at the -566 GATA site.

Susanna Harju-Baker, Flávia C Costa, Halyna Fedosyuk, Renee Neades, Kenneth R Peterson

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 63 citations in OpenAlex.

  1. Molecular Basis and Genetic Modifiers of Thalassemia.Hematology/oncology clinics of North America · 2023
    Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Epigenetic regulation of fetal globin gene expression in adult erythroid cells.Translational research : the journal of laboratory and clinical medicine · 2015
    Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Transcriptional mechanisms underlying hemoglobin synthesis.Cold Spring Harbor perspectives in medicine · 2013
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Susanna Harju-BakerDepartment of Biochemistry and Molecular Biology, MS 3030, University of Kansas Medical Center, 3901 Rainbow Boulevard, Kansas City, KS 66160, USA.
Flávia C Costa
Halyna Fedosyuk
Renee Neades
Kenneth R Peterson
University of Kansas Medical Center · US

Funding

UNDERSTANDING THE ROLE OF SMALL RNAS IN ARABIDOPSIS POLLEN DEVELOPMENTP20RR016475 · NCRR · UNIVERSITY OF KANSAS MEDICAL CENTER · PI ACKLEY, BRIAN DOUGLAS · 2001 to 2011
$38.1M
Regulation of Globin Gene Switching in Human ES CellsR01HL067336 · NHLBI · UNIVERSITY OF KANSAS MEDICAL CENTER · PI PETERSON, KENNETH R · 2001 to 2004
$1.5M
Molecular control of fetal G-globin gene expressionR01DK061804 · NIDDK · UNIVERSITY OF KANSAS MEDICAL CENTER · PI PETERSON, KENNETH R · 2001 to 2004
$1.2M
ROLE OF THE LCR IN HUMAN BETA-GLOBIN GENE REGULATIONR01DK053510 · NIDDK · UNIVERSITY OF WASHINGTON · PI PETERSON, KENNETH R · 1998 to 2001
$513k
NCRR NIH HHS P20 RR016475NHLBI NIH HHS R01 HL067336NIDDK NIH HHS R01 DK053510NIDDK NIH HHS R01 DK061804
6 · The paper itself

Abstract

Autonomous silencing of gamma-globin transcription is an important developmental regulatory mechanism controlling globin gene switching. An adult stage-specific silencer of the (A)gamma-globin gene was identified between -730 and -378 relative to the mRNA start site. A marked copy of the (A)gamma-globin gene inserted between locus control region 5' DNase I-hypersensitive site 1 and the epsilon-globin gene was transcriptionally silenced in adult beta-globin locus yeast artificial chromosome (beta-YAC) transgenic mice, but deletion of the 352-bp region restored expression. This fragment reduced reporter gene expression in K562 cells, and GATA-1 was shown to bind within this sequence at the -566 GATA site. Further, the Mi2 protein, a component of the NuRD complex, was observed in erythroid cells with low gamma-globin levels, whereas only a weak signal was detected when gamma-globin was expressed. Chromatin immunoprecipitation of fetal liver tissue from beta-YAC transgenic mice demonstrated that GATA-1, FOG-1, and Mi2 were recruited to the (A)gamma-globin -566 or (G)gamma-globin -567 GATA site when gamma-globin expression was low (day 18) but not when gamma-globin was expressed (day 12). These data suggest that during definitive erythropoiesis, gamma-globin gene expression is silenced, in part, by binding a protein complex containing GATA-1, FOG-1, and Mi2 at the -566/-567 GATA sites of the proximal gamma-globin promoters.

Indexed as

AnimalsBase SequenceBinding SitesChromosomes, Artificial, YeastDNA-Binding ProteinsDNA PrimersErythropoiesisGATA1 Transcription FactorGATA Transcription FactorsGene ExpressionGene SilencingGlobinsHistone DeacetylasesHumansK562 CellsMacromolecular SubstancesDNA-Binding ProteinsDNA PrimersGata1 protein, mouseGATA1 Transcription FactorGATA Transcription FactorsGlobinsHistone DeacetylasesMacromolecular SubstancesMi-2 Nucleosome Remodeling and Deacetylase ComplexNuclear ProteinsRNA, MessengerTranscription FactorsZfpm1 protein, mouse

Identifiers

PMID18347053
PMCPMC2423176
OpenAlexW2115572682

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.